Query= MSMg01no380_c23.b1 MSMg01no380_c23.b1 CHROMAT_FILE:
MSMg01no380_c23.b1 PHD_FILE: MSMg01no380_c23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:21:10 2005
(572 letters)
>mm_chr1_193382575_193383546
Length = 972
Score = 1091 bits (564), Expect = 0.0
Identities = 570/572 (99%)
Strand = Plus / Plus
Query: 1 acatggtaggagagaactgggctcccataaattgtttttgatctctccatgcatgccatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acatggtaggagagaactgggctcccataaattgtttttgatctctccatgcatgccatg 260
Query: 61 tgtgtaacatgggcacacatgtggcggtcagaggacaacttgccggagtaaattctttcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtgtaacatgggcacacatgtggcggtcagaggacaacttgccggagtaaattctttcc 320
Query: 121 ttccattgtgtgggttccagggatcaacttcagggcatcaggaatgatagaaaaagctcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttccattgtgtgggttccagggatcaacttcagggcatcaggaatgatagaaaaagctcc 380
Query: 181 tttactcactgagccatgttgctggtcccttaatcttttcccagtaattctagatgttac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttactcactgagccatgttgctggtcccttaatcttttcccagtaattctagatgttac 440
Query: 241 taaggaaacagcctatacatgactatcatgtatgttaacatgaacttagtgagcaagata 300
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taaggaaacagcctaaacatgactatcatgtatgttaacatgaacttagtgagcaagata 500
Query: 301 gtcaggaagataaaaatgcacttgctgtgcaagcttggcagcctgagtctggtcacaaga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtcaggaagataaaaatgcacttgctgtgcaagcttggcagcctgagtctggtcacaaga 560
Query: 361 gaccatggtggagaaaaatgacatctaaaggttgtcctctgattttcacacatgcacacc 420
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 561 gaccatggtggagaaaaatgacttctaaaggttgtcctctgattttcacacatgcacacc 620
Query: 421 aacacgagcacaccacacataacaggaataaaccggtcactgaaggatgacttgtccaag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aacacgagcacaccacacataacaggaataaaccggtcactgaaggatgacttgtccaag 680
Query: 481 tctgctcagagctccctacagcgtaggaaatcgatttcccctgtgtctcattcaccagaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tctgctcagagctccctacagcgtaggaaatcgatttcccctgtgtctcattcaccagaa 740
Query: 541 aatgctgctgtatgctcagttacacgtgcaga 572
||||||||||||||||||||||||||||||||
Sbjct: 741 aatgctgctgtatgctcagttacacgtgcaga 772
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 572
Length of database: 972
Length adjustment: 10
Effective length of query: 562
Effective length of database: 962
Effective search space: 540644
Effective search space used: 540644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no380_c23.g1 MSMg01no380_c23.g1 CHROMAT_FILE:
MSMg01no380_c23.g1 PHD_FILE: MSMg01no380_c23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:21:10 2005
(555 letters)
>mm_chr1_193571645_193572599
Length = 955
Score = 748 bits (387), Expect = 0.0
Identities = 399/403 (99%), Gaps = 1/403 (0%)
Strand = Plus / Minus
Query: 153 tagagcaaccagtcagaaacatgggctagaaacaactgttactggcatctgtgggggcag 212
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 955 tagagcaaccagtcagaaacatgggctagaaacaactgttactggcatctgtgagggcag 896
Query: 213 gcaatcaatcttggagattaactgattccttgacccatgagatttgaggctatctccaag 272
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 895 gcaatcaatcttggagattaactgattccttgacccatgagatttgaggctatctccaag 836
Query: 273 taaacagcattggagtttagggaacacccagctgtcttccattgaggaactgatttcttg 332
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 835 taaacagcattggagtttagggaacacccagctgtcttccattgaggaactgctttcttg 776
Query: 333 ttcagtgtatgaaaggaaaaaaaaaaaaaaccctcccatcaggcattaaaggaaaattag 392
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775 ttcagtgtatgaaagg-aaaaaaaaaaaaaccctcccatcaggcattaaaggaaaattag 717
Query: 393 agatgctttaaggccctggtactagaacccaagttttgtacgtattaaggagtgcattac 452
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716 agatgctttaaggccctggtactagaacccaagttttgtacgtattaaggagtgcattac 657
Query: 453 cactgccctgcagtccccagccctggagttcaggtttgtttttctactatatctttgaat 512
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 cactgccctgcagtccccagccctggagttcaggtttgtttttctactatatctttgaat 597
Query: 513 caactgaaggaataaagttgcatgttacttaatacattgaatt 555
||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 596 caactgaagaaataaagttgcatgttacttaatacattgaatt 554
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 555
Length of database: 955
Length adjustment: 10
Effective length of query: 545
Effective length of database: 945
Effective search space: 515025
Effective search space used: 515025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
