ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CAAGGTCTATACCTGTATACATACATAAATATAATGCAAGCAAAATACAG
CAGCCAATAGCCAACATCAGTCTTAATGAAGAAAAACTTGAAGTGCTCCC
ACTAAAATCAGGGACCAGACAAGGCTGCCCACTCTCTCCCTACCTATTCA
ATACAGTACTTGACATTCTATCCAGAGCAATTAGACAGCAAAAGGAGGTC
AAGGGGATACAAATTGGAAAGGAGGAAGTCAAGATATCACTGTTTGGGGA
TGATATGATAGTATACACAAGTGACCCAAAAAATGCACACTAGAACTTCT
ACAGATGATAAAGAACTTCAGCAAAGTGGCTGGATTAACTCAAGTCATGC
TTCCTCTACTCAAAGGTTAAATTTATTTTTAAACAAAACATATAACCACA
ATCTTACATTGGTAGAAATCTTATTTATTTATTTATTCATTCATTCATTC
ATTCATTCATTCATTCATTTACACTCCATATTTTATTCCCCAAACCTACT
CTCCATTTTAATCTGGATCTACCATATCTCTCATACACTGAACCACCAAA
CACACAGCACACACCAGCTGATATGAGGCCCCCCACACACATACAGTAGA
GGACTTTCAGCTCTCTGTTTATTCAGAGATGATGCACTTTAACCTCCGGA
GAACTGGAGGCCCCCGGGAGTTTAAAGGGCAGGGGGGGGGAAGGAAAAGA
AA

GCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTGAGGCATGTGGCATGGAGCTTGGCATACT
TTTACACACACACACACACACACACACACACACACACACACACACACACA
TGATCCAGAGGAACTAGAATGTCATATGTGAAAACCAAAGTTATTTTACA
TTTCATTTTTATTGACTAATGCTGTGTAATACTTGGCTGTGTGTTCTTTT
TTGAATCATTGTGTAACAAAGTCATAGATGGAAAAAAACTCTAGGTTAGA
TACAAGATGGACAGTCCACTAATCTGGCTGGTGAGTATTGTATAAAACTG
TGTGTGTGTGTGTGTGTGTATCTCACATGCACATTATGCCTAAGTTAAGG
ATGCCCTGAAATTATAAGATGCTGTTATCCATTGACCAGACTTTAGGGAT
ATCTCTTTAAAGTGTGTTGACATTTAATTGACCTTTGAAGGTTCATTCTG
TTAATCATACTCAAAGTGCTAAAGCTATGGTTGACTGCTTTGNAATTTTT
ACGTTCAGCCGTGCTTAGCATATAAAGACTCCGGCAAAATTGCTGCTTAT
TTAGAGAAAGATTCCTTCTCCCACAAAAAGTGGACTATGCTTGTGCCGTT
TTGCTTCTAAAACCTTGTTTGCTCCCGCCTAGTTTAAGTTAAACGTCTTC
ACTTTATTTTTTTTCTCCTACCCCCCTGCGCATATCGCTTTC

Query= MSMg01no380_j18.g1 MSMg01no380_j18.g1 CHROMAT_FILE:
MSMg01no380_j18.g1 PHD_FILE: MSMg01no380_j18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:21:44 2005
         (483 letters)



>mm_chr1_23268066_23268948
          Length = 883

 Score =  801 bits (414), Expect = 0.0
 Identities = 466/505 (92%), Gaps = 34/505 (6%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgaggcatgtggcatggagcttggcatacttttacacacacacacacacacacacacaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 tgaggcatgtggcatggagcttggcatacttttacacacacacacacacacacacacaca 250

                                                                       
Query: 61  cacacacacacacacacacatgatccagaggaactagaatgtcatatgtgaaaaccaaag 120
           ||||||||            ||||||| || |||||||||||||||||||||||||||||
Sbjct: 251 cacacaca------------tgatccatagaaactagaatgtcatatgtgaaaaccaaag 298

                                                                       
Query: 121 ttattttacatttcatttttattgactaatgctgtgtaatacttggctgtgtgttctttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 ttattttacatttcatttttattgactaatgctgtgtaatacttggctgtgtgttctttt 358

                                                                       
Query: 181 ttgaatcattgtgtaacaaagtcatagatggaaaaaaactctaggttagatacaagatgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 ttgaatcattgtgtaacaaagtcatagatggaaaaaaactctaggttagatacaagatgg 418

                                                                       
Query: 241 acagtccactaatctggctggtgagtattgtataaaactgtgtgtgtgtgtgtgtgtgt- 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 419 acagtccactaatctggctggtgagtattgtataaaactgtgtgtgtgtgtgtgtgtgtg 478

                                                                       
Query: 300 ---------------------atctcacatgcacattatgcctaagttaaggatgccctg 338
                                ||||||| |||||||||||||||||||||||||||||||
Sbjct: 479 tgtgtatgtgtgtgtgtgtgtatctcacgtgcacattatgcctaagttaaggatgccctg 538

                                                                       
Query: 339 aaattataagatgctgttatccattgaccagactttagggatatctctttaaagtgtgtt 398
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 aaattataagatgctgttatccattgaccagactttagggatatctctttaaagtgtgtt 598

                                                                       
Query: 399 gacatttaattgacctttgaaggttcattctgttaatcatactcaaagtgctaaagctat 458
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 gacatttaattgacatttgaaggttcattctgttaatcatactcaaagtgctaaagctat 658

                                    
Query: 459 ggttgactgctttgnaatttttacg 483
           |||||||||||||| ||||||||||
Sbjct: 659 ggttgactgctttggaatttttacg 683



 Score = 54.9 bits (28), Expect = 1e-11
 Identities = 28/28 (100%)
 Strand = Plus / Minus

                                       
Query: 33  tacacacacacacacacacacacacaca 60
           ||||||||||||||||||||||||||||
Sbjct: 484 tacacacacacacacacacacacacaca 457


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 72
Number of extensions: 15
Number of successful extensions: 15
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 2
Length of query: 483
Length of database: 883
Length adjustment: 10
Effective length of query: 473
Effective length of database: 873
Effective search space:   412929
Effective search space used:   412929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)