Query= MSMg01no381_a10.b1 MSMg01no381_a10.b1 CHROMAT_FILE:
MSMg01no381_a10.b1 PHD_FILE: MSMg01no381_a10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:22:18 2005
(487 letters)
>mm_chr1_132722283_132723168
Length = 886
Score = 893 bits (462), Expect = 0.0
Identities = 477/482 (98%), Gaps = 1/482 (0%)
Strand = Plus / Minus
Query: 6 gaattccccctttctgcctagagctttcagtacctctggagctccgtgttttctcttttt 65
|||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct: 686 gaattccccctttctgcctagagctttcagtacctccggagctccgtgttttctc-tttt 628
Query: 66 cagcctggactctatctgggctccctgaagctgagctgaatgtggagggggccctgacct 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 cagcctggactctatctgggctccctgaagctgagctgaatgtggagggggccctgacct 568
Query: 126 ggctattgacagaagaggactcccacaagctgtgtggagatagcaactcctttcctcact 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 ggctattgacagaagaggactcccacaagctgtgtggagatagcaactcctttcctcact 508
Query: 186 acagcaagtccaggtcatgacctatttgggttttccagatattctccagataatcatagc 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 acagcaagtccaggtcatgacctatttgggttttccagatattctccagataatcatagc 448
Query: 246 cttcctgtgtcacacaaatgaagcccattgttccacatacattcctctacaccctcacaa 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 cttcctgtgtcacacaaatgaagcccattgttccacatacattcctctacaccctcacaa 388
Query: 306 cctctcccgcccccttgaagttgtatgaactgtacctgggcaggactcaccagctcttct 365
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 387 cctctcccgcccccttgaagttgtatgaactgtacctgggcaggactcactagctcttct 328
Query: 366 ttcaagagtcttaatttccaagaaggggaaggggaaaaggagaaacaagggctagagaaa 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 ttcaagagtcttaatttccaagaaggggaaggggaaaaggagaaacaagggctagagaaa 268
Query: 426 gaggaaggtcaggcagaactcgctcatgtgcactaaccaccagacaagcacagattttga 485
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 267 caggaaggtcaggcagaactcactcatgtgcactaaccaccagacaagcacagattttga 208
Query: 486 tg 487
||
Sbjct: 207 tg 206
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 487
Length of database: 886
Length adjustment: 10
Effective length of query: 477
Effective length of database: 876
Effective search space: 417852
Effective search space used: 417852
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no381_a10.g1 MSMg01no381_a10.g1 CHROMAT_FILE:
MSMg01no381_a10.g1 PHD_FILE: MSMg01no381_a10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:22:18 2005
(485 letters)
>mm_chr1_132532440_132533324
Length = 885
Score = 915 bits (473), Expect = 0.0
Identities = 482/485 (99%)
Strand = Plus / Plus
Query: 1 ttctaagcagatatttattatcatgaacattggtgccagcattacaaaggttggtaactg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttctaagcagatatttattatcatgaacattggtgccagcattacaaaggttggtaactg 260
Query: 61 caggcaatctgtttggaactgaagtcagacagccaatgagacgctacttcctccttaaga 120
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 261 caggcaatctgtttggaactgaagtcagaaagccaatgagacgctacttcctccttaaga 320
Query: 121 gaacatacagtcataactcccggtcagtgtgcttcagtgtgtttctccttttgtatctgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaacatacagtcataactcccggtcagtgtgcttcagtgtgtttctccttttgtatctgg 380
Query: 181 agctgtagtagttcaacctccagagtcagcttgtagatctccagagccattttcacatcg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agctgtagtagttcaacctccagagtcagcttgtagatctccagagccattttcacatcg 440
Query: 241 tgtgaatttggcacatactgcatggtcttgttgcctgtaagcgcaggcttaaggtcttca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgtgaatttggcacatactgcatggtcttgttgcctgtaagcgcaggcttaaggtcttca 500
Query: 301 gaggcctcctgaaagagatgcaggtttgaggcagcagagagtggcttcacctggttatca 360
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 501 gaggcctcctgaaagagatgcaggtttgaggcagcagagagtggcttcacttggttatca 560
Query: 361 agaaatagggcaacagtatattaggtggtctagaaaaataggatgcagtattcctaggtt 420
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agaaataggacaacagtatattaggtggtctagaaaaataggatgcagtattcctaggtt 620
Query: 421 tatgggagatcactttttaacgggattcagtattttcacacactcaaatgaaaatagaaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tatgggagatcactttttaacgggattcagtattttcacacactcaaatgaaaatagaaa 680
Query: 481 aatgt 485
|||||
Sbjct: 681 aatgt 685
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 885
Length adjustment: 10
Effective length of query: 475
Effective length of database: 875
Effective search space: 415625
Effective search space used: 415625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
