Query= MSMg01no381_d13.b1 MSMg01no381_d13.b1 CHROMAT_FILE:
MSMg01no381_d13.b1 PHD_FILE: MSMg01no381_d13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:22:33 2005
(444 letters)
>mm_chr1_64028493_64029336
Length = 844
Score = 812 bits (420), Expect = 0.0
Identities = 438/444 (98%)
Strand = Plus / Plus
Query: 1 agtgttttatcaagcaccaaggcaatggattctttatccatacaattattattggctaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtgttttatcaagcaccaaggcaatggattctttatccatacaattattattggctaag 260
Query: 61 tttaaattagtagaattttaaagggaaaagagttagatttgcatttgaatttttaaaaga 120
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 261 tttaaattagtagaattttaaagggaaaagagttagatttgcacttgaatttttaaaaga 320
Query: 121 ctgtaagtaggaaatatgtaatataatatcattgtattacataatttaataggggccaga 180
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 321 ctgtaagtaggaaatatgtaatataatatcgttgtattacataatttaataggggccaga 380
Query: 181 gattttaaatcacagttgctttccccctctgttgtggttctgtagaaagacaggatagca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gattttaaatcacagttgctttccccctctgttgtggttctgtagaaagacaggatagca 440
Query: 241 tggtacagaaagctttatgaagcgaagctgttcccttcatagtagctaggaaggctatag 300
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tggtacagaaagcaacatgaagcgaagctgttcccttcatagtagctaggaaggctatag 500
Query: 301 agagcaggaaagagagacgattcctttaaaggatatagcctcagtgacctatgtcattcc 360
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 501 agagcaggaaagagagacgattcttttaaaggatatagcctcagtgacctatgtcattcc 560
Query: 361 gtgaagctggcttcttacagttcctttcatttcccagtagtccacttagcaatgagtcta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtgaagctggcttcttacagttcctttcatttcccagtagtccacttagcaatgagtcta 620
Query: 421 tcaacagatcaatctattgatgaa 444
||||||||||||||||||||||||
Sbjct: 621 tcaacagatcaatctattgatgaa 644
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 444
Length of database: 844
Length adjustment: 10
Effective length of query: 434
Effective length of database: 834
Effective search space: 361956
Effective search space used: 361956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no381_d13.g1 MSMg01no381_d13.g1 CHROMAT_FILE:
MSMg01no381_d13.g1 PHD_FILE: MSMg01no381_d13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:22:33 2005
(488 letters)
>mm_chr1_64220473_64221360
Length = 888
Score = 862 bits (446), Expect = 0.0
Identities = 482/504 (95%), Gaps = 18/504 (3%)
Strand = Plus / Minus
Query: 1 attaagtgatttaacttatacttcccttgtaatatatgcacatgagtgatatgtgataaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 827 attaagtgatttaacttatacttcccttgtaatatatgcacatgagtgatatgtgattaa 768
Query: 61 aaaaattaaaaaaactctctgtggca-ttcagaaggacatttgcaaaagtgcaaaatgat 119
|||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct: 767 aaaaattaaaaaaactctctgtgg-agttcagaaggacatttgcaaaagtgcaaaatgat 709
Query: 120 gaact----------------gtatgggctcttagcaccagttgtttcttcctagtgatc 163
||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 708 gaactgtaaggaagccttgtggtatgggctcttagcaccagttgtttcttcctagtgatc 649
Query: 164 atgagacagtctctagcaccaagcacttctaaggcatggccaactatcttattcttggca 223
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 648 atgagacagtctctagcaccaagcacttctaaggcatggccagctatcttattcttggca 589
Query: 224 ctgatctggagctgggcagcatgctgagtacctcccgggagcttgctctgtcatttaggt 283
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 588 ctgatctggagctgggcagcatgctgagcacctcccgggagcttgctctgtcatttaggt 529
Query: 284 cctatatcaagctttgggtttggaaatattcaacagaggtatagagaggttccatggttg 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 cctatatcaagctttgggtttggaaatattcaacagaggtatagagaggttccatggttg 469
Query: 344 ctttaagtttacacaagtgctgtgtgagttagggtttcaatacgaggagtctgacaccag 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 ctttaagtttacacaagtgctgtgtgagttagggtttcaatacgaggagtctgacaccag 409
Query: 404 aaggcaagggtaggaggggagaaatgaagcctgcctgcctgcctgccgtgcaatttttta 463
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 408 aaggcaagggtaggaggggagaaatgaagcctgcctgcctgcctgcagtgcaatttttta 349
Query: 464 aataccgacagagagcattaatta 487
||||||||||||||||||||||||
Sbjct: 348 aataccgacagagagcattaatta 325
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 888
Length adjustment: 10
Effective length of query: 478
Effective length of database: 878
Effective search space: 419684
Effective search space used: 419684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
