BAC Information

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BAC

Clone NameMSMg01-381G07
Chromosome1 (Build37)
Map Location 47,793,556 - 47,794,082
singlet/doubletsinglet
Overlap genenone
Upstream geneSlc39a10, EG227061, LOC666869
Downstream geneLOC546734, LOC674566, LOC100041936, LOC666903
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-381G07.T7 (MSMg01no381_g07.b1)MSMg01-381G07.TJ (MSMg01no381_g07.g1)
ACCAG485544AG485545
length712771
length of high quality
(start - end)		527 (60 - 586)479 (75 - 553)
definitionCHROMAT_FILE: MSMg01no381_g07.b1 PHD_FILE: MSMg01no381_g07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:22:47 2005CHROMAT_FILE: MSMg01no381_g07.g1 PHD_FILE: MSMg01no381_g07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:22:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXTCAAAGAGGATCCGCGGAATTCACC
ATTCCTAAGCAGCCGGATTGTCAAGACCTCTCTAGCCAGACCTAGAGTTT
AAGGAGAATTCACCTTTGCCTGTCTTCTCCGTTTCTTTTCATCCCTTAAT
TTTCTTGCAGCTCATATTCTATTCCCTTCATGGTACTTGATATTTTTTTC
TTCTGTCAGTTGTTAGACAAGACACATGAGTATTATGTGCATCTCAGTTT
GAAGTTTAGTCCTGATGTTTTCCATGCTAGTTTGCCCTTTGATATTGACA
AGCCACTGCTTGAATGGCATTAATGATAAACTGCCGTTTGTTACTATTTT
AAGTAATTTTCTTCATTTACTGTAGTCTGAAGTGCTAAAGGCATGCTTTA
AAAATGACAACTGGTAATTTATCTTTCCTGCAGCCCCTCGAAAAAAGCAG
CAGTATCAAAGTTGTAAGGGAGCTGAGAGATCATCTGCCCACACACCATA
GAGAAGACTCTGGCCAGGGGCACTGTAACAGCTCTTTGATATTTTGGTAA
ACACTAAATGAACTATACTGGATAAAAGGTATGAATTACGAGGAATGATT
TACAATTGCCGATCACTATATTCTTAACGTAAAAAACCAAACTTAATCAG
CACTTCTGTAATATATATACAGATAGCGTTTCAAGAAGCCATAGGATTTT
CCCTAATCTACT

ATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTTGTTCAGTTCTGAGCCCCATTTTT
TAATGGGGTTATTTGATTTTCTGAAGTCCACCTTCTTGATTTCTTTATAT
ATGTTGGTATTAGTCCCCTATCTGATTTAGGATAGGTAAAGATCCTTTCC
CAATCTGTTGGTGGTCTTTTTGTCTTATTGACTGTGTCTTTTGCCTTGCA
GAAACTTTGGAGTTTCATTAGGTCCCATTTGTCAATTCTCGATCTTAGAG
CACAAGCCATTGCTGTTCTGTTCAGGAATTTTTCCCCTGTGCCCATATCT
TCAAGGCTTTTCCCCACTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTT
TATGTGAAGTTCCTTGATCCACTTAGATTTGACCTTAGTACAAGGAGATA
GGAATGGATCGATGTGCATTCTTCTGAATGTTAACAACCAGTTGTGACAG
CACCATTTGTTGAAAATGCTGTCATTCTTCCACTGGATGGTTTTAGCTCC
CTTGTCGAAGATCAAGTGACCATAGGTTTGTGGGTTCATTTCTGGGTCTT
CCATTCTATTCCATTGGGCCACTTGTCTGTCTCTAATACAGTAACCATGA
AGTTTTTATCCAATTTGCTCTGTAGAAAAAGTTTTATGTCCGGGCTTGGG
GGTTCTCCCCCAAAATCCTTTTATTTCTGTAAAAAATTTTTTTTTTTCCA
AGGTTTTTTTGTTTTTTCCAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no381_g07.b1 MSMg01no381_g07.b1 CHROMAT_FILE:
MSMg01no381_g07.b1 PHD_FILE: MSMg01no381_g07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:22:47 2005
         (527 letters)



>mm_chr1_47793356_47794282
          Length = 927

 Score =  988 bits (511), Expect = 0.0
 Identities = 523/527 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagccggattgtcaagacctctctagccagacctagagtttaaggagaattcacctttgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagccggattgtcaagacctctctagccagacctagagtttaaggagaattcacctttgc 260

                                                                       
Query: 61  ctgtcttctccgtttcttttcatcccttaattttcttgcagctcatattctattcccttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgtcttctccgtttcttttcatcccttaattttcttgcagctcatattctattcccttc 320

                                                                       
Query: 121 atggtacttgatatttttttcttctgtcagttgttagacaagacacatgagtattatgtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atggtacttgatatttttttcttctgtcagttgttagacaagacacatgagtattatgtg 380

                                                                       
Query: 181 catctcagtttgaagtttagtcctgatgttttccatgctagtttgccctttgatattgac 240
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 381 catctcagtttgaagtttagtcctgatgttttccatgctagtatgccctttgatattgac 440

                                                                       
Query: 241 aagccactgcttgaatggcattaatgataaactgccgtttgttactattttaagtaattt 300
           ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aagccactgcgagaatggcattaatgataaactgccgtttgttactattttaagtaattt 500

                                                                       
Query: 301 tcttcatttactgtagtctgaagtgctaaaggcatgctttaaaaatgacaactggtaatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcttcatttactgtagtctgaagtgctaaaggcatgctttaaaaatgacaactggtaatt 560

                                                                       
Query: 361 tatctttcctgcagcccctcgaaaaaagcagcagtatcaaagttgtaagggagctgagag 420
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tatctttcctgcagcccctagaaaaaagcagcagtatcaaagttgtaagggagctgagag 620

                                                                       
Query: 421 atcatctgcccacacaccatagagaagactctggccaggggcactgtaacagctctttga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atcatctgcccacacaccatagagaagactctggccaggggcactgtaacagctctttga 680

                                                          
Query: 481 tattttggtaaacactaaatgaactatactggataaaaggtatgaat 527
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tattttggtaaacactaaatgaactatactggataaaaggtatgaat 727


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 527
Length of database: 927
Length adjustment: 10
Effective length of query: 517
Effective length of database: 917
Effective search space:   474089
Effective search space used:   474089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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