Query= MSMg01no381_j09.b1 MSMg01no381_j09.b1 CHROMAT_FILE:
MSMg01no381_j09.b1 PHD_FILE: MSMg01no381_j09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:23:03 2005
(249 letters)
>mm_chr1_20497482_20498130
Length = 649
Score = 482 bits (249), Expect = e-140
Identities = 249/249 (100%)
Strand = Plus / Plus
Query: 1 cgatttaccaaactctgttccaaagattgtacctgcatcccactagtcctgtgtttcccc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cgatttaccaaactctgttccaaagattgtacctgcatcccactagtcctgtgtttcccc 260
Query: 61 cttgtcctcaacatgaaatgtaaactgagtttaagtcaagaagctcaataactcacatcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttgtcctcaacatgaaatgtaaactgagtttaagtcaagaagctcaataactcacatcc 320
Query: 121 actttgacatgctgcaatggccagaacggcaagatgctgggtttgctcaaaacatactga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 actttgacatgctgcaatggccagaacggcaagatgctgggtttgctcaaaacatactga 380
Query: 181 tgagtaaggggacaccttgtaatggggtctgagccacagctgcttcagccacctctgaca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgagtaaggggacaccttgtaatggggtctgagccacagctgcttcagccacctctgaca 440
Query: 241 gtgaggagg 249
|||||||||
Sbjct: 441 gtgaggagg 449
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space: 153600
Effective search space used: 153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no381_j09.g1 MSMg01no381_j09.g1 CHROMAT_FILE:
MSMg01no381_j09.g1 PHD_FILE: MSMg01no381_j09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:23:03 2005
(408 letters)
>mm_chr1_20667380_20668185
Length = 806
Score = 646 bits (334), Expect = 0.0
Identities = 391/412 (94%), Gaps = 7/412 (1%)
Strand = Plus / Minus
Query: 1 tctgtcaggaaatagagaaacaagctaagagg---agaagggtcccaaactggctcatag 57
||||||||||||||||||| |||||||||||| ||||||||||| |||||||||||||
Sbjct: 727 tctgtcaggaaatagagaagcaagctaagaggagaagaagggtcccgaactggctcatag 668
Query: 58 ctctgtgagggctgcttcatacaatcaacaaacaataataactttttaataataataaaa 117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 ctctgtgagggctgcttcatacaatcaacaaacaataataactttttaataataataaaa 608
Query: 118 agtaacttttttcaaataagttttctatgacagggtcattttcaatgtcttccctatgcc 177
|||||||||||||| ||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct: 607 agtaacttttttcagataagttttatatgacaggatcattttcaatgtcttccctatgcc 548
Query: 178 agctctttgaatcctcatgcctatgtgaaactgtttt-ccctgcttgtttcttgttttac 236
|||||||||||||||||| ||||||||||||||||| ||| |||||||||| |||||||
Sbjct: 547 agctctttgaatcctcatatctatgtgaaactgttttaccc-gcttgtttctggttttac 489
Query: 237 acatgaagatatgtctctagaagtgaattaaattacttatatgcaaatggaaattattaa 296
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 acatgaagatatggctctagaagtgaattaaattacttatatgcaaatggaaattattaa 429
Query: 297 aaagaaaaagaaaaatctaaccagattggaagaacagccttggataagtccaggttttct 356
||| |||||||||||| ||||||||||||||||||||||||||| |||||||| |||||
Sbjct: 428 aaa--aaaagaaaaatcaaaccagattggaagaacagccttggatcagtccaggctttct 371
Query: 357 tcatgagagcttggaaggtaagaggtgttgggaaggaagagaggaaggaagg 408
| ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 370 ttatgagagcttggaaggtaagaggtgttgggaaggaagggaggaaggaagg 319
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 408
Length of database: 806
Length adjustment: 9
Effective length of query: 399
Effective length of database: 797
Effective search space: 318003
Effective search space used: 318003
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
