BAC Information

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BAC

Clone NameMSMg01-381L08
Chromosome1 (Build37)
Map Location 142,393,587 - 142,394,065
singlet/doubletsinglet
Overlap geneKcnt2
Upstream geneF13b, Cfhr1, EG624286, EG214403, BC026782, LOC545399, EG545367, Cfh
Downstream geneEG226472
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-381L08.T7 (MSMg01no381_l08.b1)MSMg01-381L08.TJ (MSMg01no381_l08.g1)
ACCAG485785AG485786
length730767
length of high quality
(start - end)		483 (37 - 519)455 (75 - 529)
definitionCHROMAT_FILE: MSMg01no381_l08.b1 PHD_FILE: MSMg01no381_l08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:23:12 2005CHROMAT_FILE: MSMg01no381_l08.g1 PHD_FILE: MSMg01no381_l08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:23:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATTA
TAGTGCGCTAATTTGAAGGTACAGACACAACAGTGGAACATCCGTATTAC
AGTCACTGAAGTGCTCAAACAGAACCTAAACAGTAGGTATATTGTAAGAG
CACAGCTATACTCTGAGACAGTACAAAGTTCATTTTGACTCCAAATGTAT
ATTGATTCTGAAGTACAGATTTAACATATGAGACATGAGAAAATGATGGT
TGTAAGCTGTGATGTACAGTTTTACTAGGACAAATTAATTTCTTTCCTTC
ACATGACAGTTCTAAAACTATAAAAATCTTCTACCCAAATGATCAGGATT
TATTTATTTTATTTTCTCAATAATTGATGGGAATTAAGTCAGTGTCTCGA
AACACCCACATTTAAGATACCATGTGACAAATCAACTTTAAGGTTGGTGA
ATTTTAGCCAACCTATCAATTGTGAACATTCAACTTTTGATCACTTTAAC
TTCTTATTGAGCTTGATCCCTTTAATTATGTTTTCCGCTAGGGNGNATAG
CCTTTCTCAATTCCCTCAATTTANGCCATTGAATCCCATATGCAGCAAAT
ACCCCACATCCTTTTCGTTTCCTTCTAGGGGAAAGAAAAACCATTAACCA
TTTTTAAAAAAACCTCCGCCTACATTTTTGGCCCCAAAAAAGCCCATTTT
TGTTTTTTTGTGGTGAAAATTGTAAATATC

ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCCCTGTATCCCATTTTT
AATAGGCTTATTTGGTTCTCTGGAGTCTAAAATATATATATCAGCCTTCT
GTTGGATGTTGGGCTGGTAAAGATCTTTTCCCAATCTGTTGGTTGCCATT
TTGTCCTGATGACAGTGTCCTTTGCCTAACAGAACCTTTGCAATTTGATG
AGGACCCATTTGCTGACTCTTGATCTTAGAGCACAAGCCATTGGTCAGGA
AAATTTCTCCTGTGTCCATGTGTTCAAAGCCCTTCCACATTTTCTTTTCT
ATTAGTTTCAGTGTATCTGGTTTTGTGCGGAGGTCCTTCATCCAGTTGGA
CTAGAACATTGTAGAAGGAGATATAAATTGATTGATTTCCATTCTTCTGC
ATGCTGACCTCCAGTTGAACCAGCACCATTTTTGAAAATGGTATCTTTTT
TTCCACTTCATGGTTTGGTTCCTTTGTCAAAGATCAAGTGAACATAGGTG
TGTGGGTTCATTTCTGGGTCTTCAATTCTGTTCCATTGGTCTACCTGCCT
GCCACTGTACCAAATCATGCAAGTTTAACACTACTGCTCTGTAAAACACT
TTGAGGCCCAAATTGTGATTTTTCCCAAAATCTTATATTTTTTGAGAAAA
GATTCCCCTTTCCGGGTCCTCTTTTTTGGGTGGTAATCCTTCGGTTTTTC
CTACAAATTTTCCATTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no381_l08.b1 MSMg01no381_l08.b1 CHROMAT_FILE:
MSMg01no381_l08.b1 PHD_FILE: MSMg01no381_l08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:23:12 2005
         (483 letters)



>mm_chr1_142393383_142394265
          Length = 883

 Score =  911 bits (471), Expect = 0.0
 Identities = 477/479 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcattatagtgcgctaatttgaaggtacagacacaacagtggaacatccgtattac 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcattatagtgtgctaatttgaaggtacagacacaacagtggaacatccgtattac 264

                                                                       
Query: 65  agtcactgaagtgctcaaacagaacctaaacagtaggtatattgtaagagcacagctata 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agtcactgaagtgctcaaacagaacctaaacagtaggtatattgtaagagcacagctata 324

                                                                       
Query: 125 ctctgagacagtacaaagttcattttgactccaaatgtatattgattctgaagtacagat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctctgagacagtacaaagttcattttgactccaaatgtatattgattctgaagtacagat 384

                                                                       
Query: 185 ttaacatatgagacatgagaaaatgatggttgtaagctgtgatgtacagttttactagga 244
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 385 ttaacatatgagacatgagaaaatgatggttgtaagctgtgatgtacagttttactagta 444

                                                                       
Query: 245 caaattaatttctttccttcacatgacagttctaaaactataaaaatcttctacccaaat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 caaattaatttctttccttcacatgacagttctaaaactataaaaatcttctacccaaat 504

                                                                       
Query: 305 gatcaggatttatttattttattttctcaataattgatgggaattaagtcagtgtctcga 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gatcaggatttatttattttattttctcaataattgatgggaattaagtcagtgtctcga 564

                                                                       
Query: 365 aacacccacatttaagataccatgtgacaaatcaactttaaggttggtgaattttagcca 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aacacccacatttaagataccatgtgacaaatcaactttaaggttggtgaattttagcca 624

                                                                      
Query: 425 acctatcaattgtgaacattcaacttttgatcactttaacttcttattgagcttgatcc 483
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 acctatcaattgtgaacattcaacttttgatcactttaacttcttattgagcttgatcc 683


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 483
Length of database: 883
Length adjustment: 10
Effective length of query: 473
Effective length of database: 873
Effective search space:   412929
Effective search space used:   412929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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