Query= MSMg01no381_m12.b1 MSMg01no381_m12.b1 CHROMAT_FILE:
MSMg01no381_m12.b1 PHD_FILE: MSMg01no381_m12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:23:18 2005
(245 letters)
>mm_chr1_135092271_135092915
Length = 645
Score = 443 bits (229), Expect = e-129
Identities = 241/245 (98%)
Strand = Plus / Minus
Query: 1 tgtgtcctgaggagagccccaggcctgtggaaggctgtggagggaagcaaggcaggagaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgtgtcctgaggagagccccaggcctgtggaaggctgtggagggaagcaaggcaggagaa 386
Query: 61 ggcctcagagaagatacctactacttctaaagggagacaaagggcagaggagggagccag 120
||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct: 385 ggcctcagagaagatacctaccacttctaaagagagacaaagggcagaggagggagccag 326
Query: 121 gcaggtggctagccagcctaagtccaccaacagaacttatactgtttggtgactagtttc 180
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 325 gcaggtggctagccagcctaagtccaccaacagaacttacactgtttggtgactagtttc 266
Query: 181 tcttaagcagcaagctcagaaacacagagaaggcattcatgtcagagaagttaaagctga 240
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 265 tcttaagcagcaagctcagaaacacagagaagacattcatgtcagagaagttaaagctga 206
Query: 241 ttctt 245
|||||
Sbjct: 205 ttctt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space: 150096
Effective search space used: 150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no381_m12.g1 MSMg01no381_m12.g1 CHROMAT_FILE:
MSMg01no381_m12.g1 PHD_FILE: MSMg01no381_m12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:23:18 2005
(509 letters)
>mm_chr1_134962039_134962948
Length = 910
Score = 917 bits (474), Expect = 0.0
Identities = 501/510 (98%), Gaps = 1/510 (0%)
Strand = Plus / Plus
Query: 1 catcagagcgccacacattaggaaggttgaggaccactgacttaggcactgctagtaatg 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 catcagagcgccacacattaggaaggttgaggaccactgacttaggcagtgctagtaatg 260
Query: 61 gaagccaaggcgtcatgcatgctggacagacagacactctcccatggagtctggccctag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaagccaaggcgtcatgcatgctggacagacagacactctcccatggagtctggccctag 320
Query: 121 acaactgtcctctttgactgaagagaccctcccctttactgatgataagtacctgttttt 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcaactgtcctctttgactgaagagaccctcccctttactgatgataagtacctgttttt 380
Query: 181 gaaggactcgtgaacgctgtcctctgatctccacatatgtccgtggcattcatgccttcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaaggactcgtgaacgctgtcctctgatctccacatatgtccgtggcattcatgccttcc 440
Query: 241 cctaatagtaattaa-taaatgattgttaagaggaataaaccaaggacctctttctttcc 299
||||| || || || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cctaagagcaaacaaataaatgattgttaagaggaataaaccaaggacctctttctttcc 500
Query: 300 ttggagcacacatgatggaaagaaggataggaattacaaccacaggtggaggcatataga 359
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct: 501 ttggagcacacatgatggaaagaaggataggaattagaaccagaggtggaggcatataga 560
Query: 360 aggtgggctggatagccacagtaaagttgccctggtctctcttttcctctatctttctgt 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aggtgggctggatagccacagtaaagttgccctggtctctcttttcctctatctttctgt 620
Query: 420 ttttttacccctgttgtgggcattgaggaaatggatgctggcctggattatgtcactttg 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttttttacccctgttgtgggcattgaggaaatggatgctggcctggattatgtcactttg 680
Query: 480 ttgtcacagtatctgattattgataagtct 509
||||||||||||||||||||||||||||||
Sbjct: 681 ttgtcacagtatctgattattgataagtct 710
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 910
Length adjustment: 10
Effective length of query: 499
Effective length of database: 900
Effective search space: 449100
Effective search space used: 449100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
