BAC Information

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BAC

Clone NameMSMg01-381N05
Chromosome1 (Build37)
Map Location 155,202,018 - 155,390,795
singlet/doubletdoublet
Overlap geneEG626058, 1700012A16Rik, Dhx9, Npl
Upstream gene5730449L18Rik, Glt25d2, Rgl1, EG639787, Apobec4, Arpc5, Ncf2, Smg7, EG668097, Nmnat2, Lamc2, Lamc1, EG667795
Downstream geneLOC626096, Rgs8, Rgs16, Rnasel, LOC100043347, Rgsl1, 5830403L16Rik, EG433365, Teddm1, LOC100043357, Glul, LOC100043359, Cacna1e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-381N05.T7 (MSMg01no381_n05.b1)MSMg01-381N05.TJ (MSMg01no381_n05.g1)
ACCAG485875AG485876
length723768
length of high quality
(start - end)		429 (39 - 467)441 (75 - 515)
definitionCHROMAT_FILE: MSMg01no381_n05.b1 PHD_FILE: MSMg01no381_n05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:23:21 2005CHROMAT_FILE: MSMg01no381_n05.g1 PHD_FILE: MSMg01no381_n05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:23:21 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(155,202,018 - 155,202,443)(155,390,355 - 155,390,795)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCC
TATCTCAGGAGGAAGACAAACAATGAACTCATAAAGGAGTGCAATTTCAT
AAATGGCCAAGGGAAATACTAGAAGAAAAAAAAGAGGGGGAAAAAATCTC
AGTTTGCCTGCTGGCTGGAGATGCAGCTGGCTTAGCATGGCCTGAGAACT
AGGTTCAATGGAAGCACGGGGAAGTTACCTGAATTAACTGCTTTACAAAA
ACATCCAGGGCTTCCATTGACTCTTCTCTCAATGAATAACTTCAACAGCT
TTCTCTCCATGCATGCTGCGTAAGGAAAGACGTGGCTTTCCTGTTGAATA
TTTTATTTATCACAAGGAAGTGATGTCTGAGAGAACTGGCCTGGATCTAA
ACCACTTACATTTAATTACTGATGTGTGACTTGGGCAAGCTCCTTAGTCA
CTTAATGAGACTTCTTCGTCTGTAATATGGGATGGGCGGCAGCATTCTGT
GGAGGGACTGAACACTGCCATTACTATTAGTACCTACAAGCGTTCGCCGC
CGAAATGCCCAGGAAAAACGTATATCGGCCCATGCCCGTGGCTTTCCCTC
AACTTCTTTCTGGCCTAATTTTCCCGGTCTTTGTTTATGCCTACCCCTTT
TTTCTACCAACCCTCCCCCCTGCTTTTTTTTAAATTTTTTTCCTCTCGCT
CTCCCGCCTTTGCTTTCTCTTTT

TGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTGGCTTCTTTAAGCTTCCTCCTCCTG
TAAGAAAAGAGTTGTCACCATACCTACATTGCAAGCTGATGAGCATTAGG
AAGATAATCCTAAGTGGACAGTGCCTGGCCACTTCACTTAAAACAACAGC
TTTGAATTGTCACTGTGGCAAGAGACAAGGATTAGAGGAAGGTGGGCTAA
TTAATACTCCTTAAAAGGCCTTTCTTTGGGGAGTTCTATTCCTGAGTTTG
TAAACCTAATAAGAGTTCCTAGTTCTCATTCAGAAGTGGTCCCTCAGATA
TTTGGAGCCCAAGACTTATAAGATGTGTGAAAAACTCCCACCCTTACTGG
ATCTAACGCGCTGAACCATTATGTGGATCACTCTGCTGGCTAATGGTCTT
TGGTTTCTGTTACTCCTCCCTTTTCCCAGCTTCTGGGAAAGGCTGAAATC
AGCTTTTTCTCAATGCCTCAGCCACTTGTTGCATAGATAAGCAAGAGGCA
TGTGATTACCGGATCAGGCTGGACCCGTGAGATCCTGTCTGGGTCACAGC
TCTGCACTTTTCATCCGCTTTCTGTTTCCTACCCCCACAAATTGTATTCC
CCTGGCGCCCTTATTTTTCCCCCGGAACATCTTGTGAACAATAGTCGGCC
CCTTCCTAATCCGCTGGTTCTCGAAGCCCCTAACCCCCCTTTTCTTATTT
TCCCCCTTCCTTTCTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no381_n05.b1 MSMg01no381_n05.b1 CHROMAT_FILE:
MSMg01no381_n05.b1 PHD_FILE: MSMg01no381_n05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:23:21 2005
         (429 letters)



>mm_chr1_155201815_155202643
          Length = 829

 Score =  824 bits (426), Expect = 0.0
 Identities = 426/426 (100%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccctatctcaggaggaagacaaacaatgaactcataaaggagtgcaatttcata 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccctatctcaggaggaagacaaacaatgaactcataaaggagtgcaatttcata 263

                                                                       
Query: 64  aatggccaagggaaatactagaagaaaaaaaagagggggaaaaaatctcagtttgcctgc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aatggccaagggaaatactagaagaaaaaaaagagggggaaaaaatctcagtttgcctgc 323

                                                                       
Query: 124 tggctggagatgcagctggcttagcatggcctgagaactaggttcaatggaagcacgggg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tggctggagatgcagctggcttagcatggcctgagaactaggttcaatggaagcacgggg 383

                                                                       
Query: 184 aagttacctgaattaactgctttacaaaaacatccagggcttccattgactcttctctca 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aagttacctgaattaactgctttacaaaaacatccagggcttccattgactcttctctca 443

                                                                       
Query: 244 atgaataacttcaacagctttctctccatgcatgctgcgtaaggaaagacgtggctttcc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 atgaataacttcaacagctttctctccatgcatgctgcgtaaggaaagacgtggctttcc 503

                                                                       
Query: 304 tgttgaatattttatttatcacaaggaagtgatgtctgagagaactggcctggatctaaa 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tgttgaatattttatttatcacaaggaagtgatgtctgagagaactggcctggatctaaa 563

                                                                       
Query: 364 ccacttacatttaattactgatgtgtgacttgggcaagctccttagtcacttaatgagac 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ccacttacatttaattactgatgtgtgacttgggcaagctccttagtcacttaatgagac 623

                 
Query: 424 ttcttc 429
           ||||||
Sbjct: 624 ttcttc 629


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 429
Length of database: 829
Length adjustment: 9
Effective length of query: 420
Effective length of database: 820
Effective search space:   344400
Effective search space used:   344400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no381_n05.g1 MSMg01no381_n05.g1 CHROMAT_FILE:
MSMg01no381_n05.g1 PHD_FILE: MSMg01no381_n05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:23:21 2005
         (441 letters)



>mm_chr1_155390155_155390995
          Length = 841

 Score =  822 bits (425), Expect = 0.0
 Identities = 437/441 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tggcttctttaagcttcctcctcctgtaagaaaagagttgtcaccatacctacattgcaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 tggcttctttaagcttcctcctcctgtaagaaaagagttgtcaccatacctacattgcaa 582

                                                                       
Query: 61  gctgatgagcattaggaagataatcctaagtggacagtgcctggccacttcacttaaaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 gctgatgagcattaggaagataatcctaagtggacagtgcctggccacttcacttaaaac 522

                                                                       
Query: 121 aacagctttgaattgtcactgtggcaagagacaaggattagaggaaggtgggctaattaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 aacagctttgaattgtcactgtggcaagagacaaggattagaggaaggtgggctaattaa 462

                                                                       
Query: 181 tactccttaaaaggcctttctttggggagttctattcctgagtttgtaaacctaataaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 tactccttaaaaggcctttctttggggagttctattcctgagtttgtaaacctaataaga 402

                                                                       
Query: 241 gttcctagttctcattcagaagtggtccctcagatatttggagcccaagacttataagat 300
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 gctcctagttctcattcagaagtggtccctcagatatttggagcccaagacttataagat 342

                                                                       
Query: 301 gtgtgaaaaactcccacccttactggatctaacgcgctgaaccattatgtggatcactct 360
           |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||
Sbjct: 341 gtgtgaaaaactcccacccttactggatctaacgcgctgaagtattatgtggatcactct 282

                                                                       
Query: 361 gctggctaatggtctttggtttctgttactcctcccttttcccagcttctgggaaaggct 420
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 gctggctaatggtctttgttttctgttactcctcccttttcccagcttctgggaaaggct 222

                                
Query: 421 gaaatcagctttttctcaatg 441
           |||||||||||||||||||||
Sbjct: 221 gaaatcagctttttctcaatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 441
Length of database: 841
Length adjustment: 9
Effective length of query: 432
Effective length of database: 832
Effective search space:   359424
Effective search space used:   359424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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