BAC Information

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BAC

Clone NameMSMg01-381O10
Chromosome1 (Build37)
Map Location 23,353,698 - 23,354,008
singlet/doubletsinglet
Overlap genenone
Upstream geneRims1, Rims1, EG665725, LOC665731, 4933415F23Rik, Rn4.5s-ps4, EG623356
Downstream geneOgfrl1, LOC665782, B3gat2, Smap1, 1110058L19Rik, 4921533L14Rik, LOC665808, Col9a1, Col19a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-381O10.T7 (MSMg01no381_o10.b1)MSMg01-381O10.TJ (MSMg01no381_o10.g1)
ACCAG485933AG485934
length714751
length of high quality
(start - end)
530 (36 - 565)315 (326 - 640)
definitionCHROMAT_FILE: MSMg01no381_o10.b1 PHD_FILE: MSMg01no381_o10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:23:27 2005CHROMAT_FILE: MSMg01no381_o10.g1 PHD_FILE: MSMg01no381_o10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:23:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATTGT
TTTTCATAGCTGTGTAGTACTCCATTGTGTAAATGTATCACATTTTCTGT
ATCCATTCCTCTGTTGAGGGACATCTGGGTTCTTTCCAGCTTCTGACTAT
TATAAATAAGGCTACTTTGAACATAGTGGAACATGTGTCCTTATTACATG
TTGGAGCATCTTCTGGGTATATACTCAGGAGTTGTATAGCTAGGTCCTCA
GGTAATACTATGTCCAATTTTTGGAGGAACCACCAGACTGACTTCCAGAG
TGGTTGTACAAGCTTGCAATCCCACTAGCAATGAAGGAGTGTTCCTCTTT
CTCCACATCCTTGCCAATATCTGCTGTCATCTGAGTTTTTGATCTTAGCC
CTTATGACTGGTGTTATTGCCCTGATGACTAATGATGTTGAACATTTCTT
TAGGTGCTTCTCACCCATTCAGTATTCCTCAGTTGAAAATTATTTGTATA
AATCTGTACACCATTTTTAATATGGGTATTTGGTTCTCTGGAGCCTAACT
TCTTGAATTCTTTGTATATATTGGATTTTAGCCCTGTGTCCGATGTACGG
TTGTTAAAGAACTTTTTCCAATCTGTTGGTCGCCACCTTGCCCCACTGTA
CAGTGCCCCTTTTCTTTTCGACACCCTTGCTATTTCATGATGTCTCCATT
TGCCCCGTCTCGAN
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCTTCCACTCACCCATCCACACTTTGTCTCTTC
CCTTCTGCCTTCAAGGACACTCTGTGGGAGAAACAAAGATGGAAGGCTAA
GTGGAAGTCCCTCTAAAGTGTATAAATGAACTGAGGAGTAACCGTAAGAG
TAGAAAGAACTGATTGCATCCGCCTTCTGTGAGCGATAGTGGAGGACACA
AATATAAAATTGTTTCAAAGGTGGATTCTGGAAATGCAAGGGAGAAACAA
GGGGAGGTAAGAAAGCTTTTGTATCCCAGCTCTGGAAAGATAGCTCAGTG
GTTAAGAGCACTGACTGCTCTTCCAGAGGTCCTGAGTTCAATTCCCAGCA
ACCACATGGTAGCTCACAACCACCTGTAATGGGATCTGATGCACACTTCT
GGTGTGTCTGAAGACAGCTATAGTGTACTTTCATTTACATAAAATGCATA
AGCAGGCATCCTAAGTTGTTGCGCAAGGAAGTACATACAGGTGGTCTATT
CCAACAGGACCATGTGTCTGTAATATCGACTACATTAGCTAAGGCTGTAT
GGAACCAAACCTGGGAAACTAACAAATCTCATGTCTGAAAAGAGGTGGTT
TGGTTTGAGGACATCTTTAGAGGTGTTATTCAGGGGGCACATGTCACTTG
CTGATTGGGCTTGTGGCAGGAGACTATTTACGTAAACTATGGGAAAACAT
G
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no381_o10.g1 MSMg01no381_o10.g1 CHROMAT_FILE:
MSMg01no381_o10.g1 PHD_FILE: MSMg01no381_o10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:23:27 2005
         (315 letters)



>mm_chr1_23353330_23354040
          Length = 711

 Score =  590 bits (305), Expect = e-173
 Identities = 311/315 (98%), Gaps = 4/315 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccagctctggaaagatagctcagtggttaagagcactgactgctcttccagaggtcctga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 ccagctctggaaagatagctcagtggttaagagcactgactgctcttccagaggtcctga 620

                                                                       
Query: 61  gttcaattcccagcaaccacatggtagctcacaaccacctgtaatgggatctgatgcaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 gttcaattcccagcaaccacatggtagctcacaaccacctgtaatgggatctgatgcaca 560

                                                                       
Query: 121 cttctggtgtgtctgaagacagctatagtgtactttcatttacataaaatgcataagcag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 cttctggtgtgtctgaagacagctatagtgtactttcatttacataaaatgcataagcag 500

                                                                       
Query: 181 gcatcctaagttgttgcgcaaggaagtacatacaggtggtctattccaacaggaccatgt 240
           ||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||
Sbjct: 499 gcatcctaagttgttgcgcaaggaag----tacaggtggtctattccaacaggaccatgt 444

                                                                       
Query: 241 gtctgtaatatcgactacattagctaaggctgtatggaaccaaacctgggaaactaacaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 gtctgtaatatcgactacattagctaaggctgtatggaaccaaacctgggaaactaacaa 384

                          
Query: 301 atctcatgtctgaaa 315
           |||||||||||||||
Sbjct: 383 atctcatgtctgaaa 369


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 711
Length adjustment: 9
Effective length of query: 306
Effective length of database: 702
Effective search space:   214812
Effective search space used:   214812
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)