Query= MSMg01no382_f23.b1 MSMg01no382_f23.b1 CHROMAT_FILE:
MSMg01no382_f23.b1 PHD_FILE: MSMg01no382_f23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:24:06 2005
(464 letters)
>mm_chr1_134571865_134572727
Length = 863
Score = 665 bits (344), Expect = 0.0
Identities = 378/390 (96%), Gaps = 6/390 (1%)
Strand = Plus / Plus
Query: 75 tgtgtaggtcaagaacaactttgggagtcagttctctcttccgccatgtgggtcctagga 134
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 tgtgtaggttgagaacaactttgggagtcagttctctcttccgccatgtgggtcctagga 334
Query: 135 attaagcacagtccatcaggctcagtggcacggcctttacgccatgagccctcacgcggc 194
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 335 attaagcacagtccatcaggctcagtggcacggcctttaccccatgagccctcacgcggc 394
Query: 195 cccaattattctttttagctccctcagcccaagcacac-atgttagctttccttacagtt 253
|||||||||||||||||||||||||||||||||||||| | ||||||||||| |||||||
Sbjct: 395 cccaattattctttttagctccctcagcccaagcacacga-gttagctttccctacagtt 453
Query: 254 caagttcagacagactatttgttttggcgactatgaatctcatatttagtaagcattttt 313
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 caagttcagacagact--ttgttttggcgactatgaatctcatatttagtaagcattttt 511
Query: 314 tttt-acacccaatctcctcccccttttattttcaatagtatcagcataacaccacttgg 372
|||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 512 tttttacacccaatctcctcccccttttattttcaatagtatcagcataagaccacttgg 571
Query: 373 ggacaaagatggatacctgccccctcttcaaacagtaacaccagttactaaatgacccaa 432
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 572 ggacaaagatggatacctgccccctcttcaaacagtaacaccagctactaaatgacccaa 631
Query: 433 ggttctgaagcatttcaccatttttttttt 462
||||||||||||||||||| ||||||||||
Sbjct: 632 ggttctgaagcatttcacc-tttttttttt 660
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 464
Length of database: 863
Length adjustment: 10
Effective length of query: 454
Effective length of database: 853
Effective search space: 387262
Effective search space used: 387262
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no382_f23.g1 MSMg01no382_f23.g1 CHROMAT_FILE:
MSMg01no382_f23.g1 PHD_FILE: MSMg01no382_f23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:24:06 2005
(479 letters)
>mm_chr1_134705133_134706011
Length = 879
Score = 872 bits (451), Expect = 0.0
Identities = 472/479 (98%)
Strand = Plus / Minus
Query: 1 acatgtggaatagcagcccagcatttggtgcctgccccacagggggctcagccaccagtc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 acatgtggaatagcagcccagcatttggtgcctgccccacagggggctcagccaccagtc 620
Query: 61 agagaagcagtaacactggacaacattgtgccctagttcctgcattagttcacagatata 120
||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 619 agagaagcagtaacattggacaacattgtgccctggttcctgcattagttcacagatata 560
Query: 121 gggcctctctacgagaggagagtcaagaaacagcatgagaaggcactatagaccggtgtt 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 559 gggcctctctacgagaggagagtcaagaaacagcatgagaaggcactatagaccagtgtt 500
Query: 181 tcttggagccatctgtgaccaggagactgtgtgctaaccagagaccctaggattaataga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 tcttggagccatctgtgaccaggagactgtgtgctaaccagagaccctaggattaataga 440
Query: 241 acatcagttcttggggacccataacaacactttatccactgtcactgtgtttttgtgggc 300
||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 439 acatcagttcttggggatccaaaacaacactttatccactgtcactgtgtttttgtgggc 380
Query: 301 caagtgataaatggatttttacttgactgtttcatgtagaccagtggggatactaatccc 360
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct: 379 caagtgataaatggatttttacttgactgtttcatgtagaccagtggggacactgatccc 320
Query: 361 atagcatattcccgcagttctagaacagattctttgaccactggagaactcccagtatgg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 atagcatattcccgcagttctagaacagattctttgaccactggagaactcccagtatgg 260
Query: 421 gccctgatccctaaaataagggctgatttcataggctgattctcaagagtctggaatgc 479
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 gccctgatccctaaaataagggctgatttcataggctgattctcaagagtctggaatgc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 479
Length of database: 879
Length adjustment: 10
Effective length of query: 469
Effective length of database: 869
Effective search space: 407561
Effective search space used: 407561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
