BAC Information

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BAC

Clone NameMSMg01-382J06
Chromosome1 (Build37)
Map Location 60,396,815 - 60,397,312
singlet/doubletsinglet
Overlap genenone
Upstream geneAls2cr7, Fzd7, Gm973, Sumo1, LOC100042476, Nol5, B430105G09Rik, LOC100043007, Bmpr2, Als2cr13, LOC100042496, Ica1l, Wdr12, Carf, Nbeal1
Downstream geneCyp20a1, Abi2, Raph1, LOC100043027, LOC100042533, Eif4a-ps4, Cd28, LOC667555, Rpl18-rs8, Ctla4, LOC100043049, Icos, LOC433313, LOC100042566
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-382J06.T7 (MSMg01no382_j06.b1)MSMg01-382J06.TJ (MSMg01no382_j06.g1)
ACCAG486449AG486450
length769754
length of high quality
(start - end)		502 (32 - 533)484 (62 - 545)
definitionCHROMAT_FILE: MSMg01no382_j06.b1 PHD_FILE: MSMg01no382_j06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:24:22 2005CHROMAT_FILE: MSMg01no382_j06.g1 PHD_FILE: MSMg01no382_j06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:24:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAGGCCAGC
CTGCGATATGATACCTGTCTCAAAAAGGCAAAAGCCAGTACGGTCAGGAC
AGCCCCTCTTACTTATTATCCAACCATATTAGATGCTTGTATCAAAGGAC
CAAAAGGCAAGGAACTCCTGACTGTCCCCACTGCTTGCTGAGCCCAGTCA
AACTGCCATCCCTCCATCTGGGCTGCTCTGGTGCCTTGTCTCAAACATAC
TGCCCCCATACAGCTCATCAAACCTATTTCTTGGCTCTGAGCCTCCATCA
GCCCCAACTGGATGTGCTAATATCTCATTGAATCCCTGTCTTCACATCTA
TATCAGTTCTCTCTGCTGCTGCCTCCAGAAAGACTTTTGTTTTCTTTGTA
GTCATTCTGTAACCTATACATACACATTTATTGTATGAAATAATGGATGA
CTTAATAGTAGCAACAAAGATTGGAATAAAAGGGCCATTAAAATCAATCT
CAATGGCACACACCTTTAAACTATCCTCTTGGAATGCAGAGACAGGCAGG
TGGATCTCTGAGAGTTCTAGGTCAGCCAGGATGCCCAAGTGAAACCCGGT
TTTTCAAAAACCGTTGTTGTGTTGCCGGATAAATAACTTATCTAGGGTAA
AAAGAACTTGTGATATAATCCTGAAGTCTTGAGGTCAACTCCCCTAAACA
TCTGTGGGGAATGTAGAAATATTATTTCTTTAAAATCTGCCCCTTTTAAT
TTGTGTATGTTTTTCCTTG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXCAGAAGATTGCCATGGCTACAGCTATAGGATTTGCTATC
ATGGGATTCATTGGCTTCTTCGTGAAACTGATCCATATACCCATTAATAA
CATTATTGTGGGTGGCTGAGTCCTTCTCATCACGGGACGAGTGAGCCAGA
GGGGGGGGGACAGGGGCATGAAGTAAAGCGTTGCCTGGATGCTGTGTGGT
GTTTGTTTCTTCCTCCTTCCTATGAGGTTTTCTACTTCTCAATTAAAATA
ATTTCAAAATAAACACTTTTTCCATAACAACAACAACAACAAAAAAGAAT
ATACTTTCTTTTAAGAGATAGCATTTTGCTTTTTAAAAACAAAACAAAAA
AAGACCAGGCAAATAAAACCCTTCCTTTTTATCATGTTTATCATTTCCGC
TTTTAATTTACAGCTGTTGATTCAGTCTTGTCTAGCTGGAACAGAAGTAA
TGTTCTAGTAATTTCTTTCCTATTAAACTTCATTTTCCTTCATTTATTAA
TTATGTCTTTTCTCTCAGAATATTAACCCTCTGTAGAGACGATTCTGCCT
GTCTCTGGCATGAAGGGCATATGCCTGGTAGCCAGTATTCCTGCTCCAGG
TTAGGGAAAAAACACGCTGGTTGTGTAATTGTTTCCTCACGGATTCTCCC
CTCATCCCTATATTTTCAGACACACTCCCTTTTATTCTTTACACCCTAAT
AAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no382_j06.b1 MSMg01no382_j06.b1 CHROMAT_FILE:
MSMg01no382_j06.b1 PHD_FILE: MSMg01no382_j06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:24:22 2005
         (502 letters)



>mm_chr1_60396611_60397512
          Length = 902

 Score =  924 bits (478), Expect = 0.0
 Identities = 493/498 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccaggccagcctgcgatatgatacctgtctcaaaaaggcaaaagccagtacggtc 64
           |||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaggccagcctgggatatgagacctgtctcaaaaaggcaaaagccagtacggtc 264

                                                                       
Query: 65  aggacagcccctcttacttattatccaaccatattagatgcttgtatcaaaggaccaaaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aggacagcccctcttacttattatccaaccatattagatgcttgtatcaaaggaccaaaa 324

                                                                       
Query: 125 ggcaaggaactcctgactgtccccactgcttgctgagcccagtcaaactgccatccctcc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ggcaaggaactcctgactgtccccactgcttgctgagcccagtcaaactgccatccctcc 384

                                                                       
Query: 185 atctgggctgctctggtgccttgtctcaaacatactgcccccatacagctcatcaaacct 244
           ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 385 atctgagctgctctggtgccttgtctcaaacatactgcccccgtacagctcatcaaacct 444

                                                                       
Query: 245 atttcttggctctgagcctccatcagccccaactggatgtgctaatatctcattgaatcc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 atttcttggctctgagcctccatcagccccaactggatgtgctaatatctcattgaatcc 504

                                                                       
Query: 305 ctgtcttcacatctatatcagttctctctgctgctgcctccagaaagacttttgttttct 364
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 505 ctgtcttcacatctatatcagttctctctgctgctgcttccagaaagacttttgttttct 564

                                                                       
Query: 365 ttgtagtcattctgtaacctatacatacacatttattgtatgaaataatggatgacttaa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ttgtagtcattctgtaacctatacatacacatttattgtatgaaataatggatgacttaa 624

                                                                       
Query: 425 tagtagcaacaaagattggaataaaagggccattaaaatcaatctcaatggcacacacct 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tagtagcaacaaagattggaataaaagggccattaaaatcaatctcaatggcacacacct 684

                             
Query: 485 ttaaactatcctcttgga 502
           ||||||||||||||||||
Sbjct: 685 ttaaactatcctcttgga 702


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 502
Length of database: 902
Length adjustment: 10
Effective length of query: 492
Effective length of database: 892
Effective search space:   438864
Effective search space used:   438864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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