BAC Information

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BAC

Clone NameMSMg01-383C07
Chromosome1 (Build37)
Map Location 27,958,695 - 27,959,184
singlet/doubletsinglet
Overlap geneEG433281
Upstream geneLOC677427, LOC100040952
Downstream geneEG665903, Gm597, LOC435614
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-383C07.T7 (MSMg01no383_c07.b1)MSMg01-383C07.TJ (MSMg01no383_c07.g1)
ACCAG486881AG486882
length7601,530
length of high quality
(start - end)
490 (33 - 522)---
definitionCHROMAT_FILE: MSMg01no383_c07.b1 PHD_FILE: MSMg01no383_c07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:25:06 2005CHROMAT_FILE: MSMg01no383_c07.g1 PHD_FILE: MSMg01no383_c07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:25:07 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTCCTGA
CATACAGTTTGGTGAGCATAAAAATTAGGTTAATCCTACAAAAAAAAAAG
GTTCAGAGGAAAGAATTCAACATCAAAGTGGAGCACATCATTCAATTTAC
AAAACCTATAGTGGGCAGACATTGGAACTGGAAAAAGGGATGAAAGTCAG
AAATACTTTGCGGGAGTAAGGAGGATCATAGCTAGTATCTAGTTATGAAA
CTATTAACACACTGGAAATTATTTCTTTATAATTTTTACTTCTTTCCTAG
TGAGAAAAATAAGATGTTCATTCATATGAATAAATATGTAACTATATCAA
TAAAGTCATAAGCATTTTGGAAAAATTTATATTGTTAAATTATTTGAATA
ACAGAAGTAAAAGAACACCTAAATTAAGACTAAATATAATTTATAACATC
ATTTTTTTCTTCATTCAGTGATTCAATGCTTTGTGAAACAGGAAGTGTAA
ACATACTCACACACATTTCAGTGTTCCTTAGACAAAAGGTTAGAATTTGG
GTTATGTGGGAAAAATAAAAAAAACCAGAAACAAAAACCTCCTCTCCTAA
ATTATGTTGAATGATTTATAAAATCCTAAGAAGAGTATGCTTTTTCCTAC
CTAAGAAACTTTAAAATAACTCCATCGTACTTCTTGACCTACCAATTCTG
GACTGCAGAAATAAACCCCACCTCACGCGGTTGAAAGACTGAAAGAATTG
GGGCCTAAGG
TTGGCCCCATTGNCGGGCGATTGTGAATATCCCGAGGGCAGCATCCCAGA
CACAGACACGAAGGNGAGCAACCACAGCAGACAGACGAACACCCGACGAA
AAANAANANCGCTCATGCTCCATAAGACTGCGCAAGACAGTAGATGCCAT
ATGTATGNCCGGAGAGCAGANGCCAACAAGAGATACGAAGCACTANACAT
GACNAGAACAACTGACGAGAGCGCAGGAGAAGACACAGACCCCCTCTGAG
AACCGCGCTACCGAGGCTCGACCGCAGAGCGTGCGTACCTGTCCTACCTA
GTCTCGTTGCTCACGTTATCGGCGCGGCGTCCGCTCGGCGTGCTCTGCAC
TCACCAGCGAGTGATGCGANCACCGCAATACCATGAGCAGCTTATGATGA
CGGAGCACGGAGGCGTGTGTACACCGNGGAATATATATCACGAACGTCAT
ATCACGTCATACGTATCATGATACCATAGACTAGCATACGCATNCCATGC
CTGATACGGGATGCGCGCGATGCGGGAGATGCGCGCGGATGTAGATAAGG
ACGNATACAGCCGATATAGAAGCGNCATTAGAANAATAAATCGATAAATG
AACTTGTATACAGACAATTATAACGCATACACACCTATATACGCCTATCG
AGTTTATACGCGAAATAAACCCATTACAACATACATCATATGAAATCTAC
ACCACTATCACCATCATGAGATCTTCGATTTCACATCTCTATATTCANCA
CATTAATCCTCTCTATTACCTTAATAGTCTGGATGCAACGCAAAGATGTC
CGACGAGAGCGCGGCAAGGTTCATATGTCACATATATCTTGTATTTACTA
AGAGACTAGAGTGTTGTGAGATATTGCACAGATCGGGATAGATACTCATC
TGTACACTGATATACTCCGGCGCGTGATCAGATGAATTCCGTATGTGNGA
ATTGAGCTAAGTATCCGACATANCGCGCTTGCGAGCAGCGAATACGATGT
TTTGTAATAGGCGTATGAGTGTATGAGTATAGATGACTAAAATTATGGTC
ATAATTAGGAGATATCGACGATATATCTGTATNTAGCATCCGCTTAATAC
GAGACGTATATTAATACTGAACATCTCTCATCATATGGACGTGCGCGCTG
TAATNTTATCGCTATGTCGGTCGACACGCATATCGCGAGACATAAAAGAC
GCGAATATATCGCACNGCCATCACGCATTAGGACACCGCACCCGAATGAT
GGTTAGAGTTATAGTGGGTTAGATNCACTTAAGACCCACATTTTATCTAT
CGTCTAATTCCAATATGCTNCACCACAATCACACACACTAGGAAGTCGAT
ATAGATAGATATCTCTATACGTGAGATGACTACTATTTTGTTATATCCTG
TATGTATNTGCTTACTGCGACAGTCTGTAGTTATACTCTGTCTAACGAAC
GCAAGATATGTAGAGCACGGGGAGGAGAGCGAGAGACGATGAGTGGAGCA
CTATGAATGATGTCATAGTACTNGTCACGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no383_c07.b1 MSMg01no383_c07.b1 CHROMAT_FILE:
MSMg01no383_c07.b1 PHD_FILE: MSMg01no383_c07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:25:06 2005
         (490 letters)



>mm_chr1_27958492_27959384
          Length = 893

 Score =  901 bits (466), Expect = 0.0
 Identities = 483/490 (98%), Gaps = 3/490 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctttcctgacatacagtttggtgagcataaaaattaggttaatcctacaaaaaa 63
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctttcctgacatagagtttggtgagcataaaaattaggttaatcctacaaaaaa 263

                                                                       
Query: 64  aaaa---ggttcagaggaaagaattcaacatcaaagtggagcacatcattcaatttacaa 120
           ||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aaaaaagggttcagaggaaagaattcaacatcaaagtggagcacatcattcaatttacaa 323

                                                                       
Query: 121 aacctatagtgggcagacattggaactggaaaaagggatgaaagtcagaaatactttgcg 180
            ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 324 gacctatagtgggcagacattggaactggaaaaagggatgaaagtcaggaatactttgcg 383

                                                                       
Query: 181 ggagtaaggaggatcatagctagtatctagttatgaaactattaacacactggaaattat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ggagtaaggaggatcatagctagtatctagttatgaaactattaacacactggaaattat 443

                                                                       
Query: 241 ttctttataatttttacttctttcctagtgagaaaaataagatgttcattcatatgaata 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ttctttataatttttacttctttcctagtgagaaaaataagatgttcattcatatgaata 503

                                                                       
Query: 301 aatatgtaactatatcaataaagtcataagcattttggaaaaatttatattgttaaatta 360
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 504 aatatgtaactatatcaataaagtcataagcattttggaaaattttatattgttaaatta 563

                                                                       
Query: 361 tttgaataacagaagtaaaagaacacctaaattaagactaaatataatttataacatcat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tttgaataacagaagtaaaagaacacctaaattaagactaaatataatttataacatcat 623

                                                                       
Query: 421 ttttttcttcattcagtgattcaatgctttgtgaaacaggaagtgtaaacatactcacac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ttttttcttcattcagtgattcaatgctttgtgaaacaggaagtgtaaacatactcacac 683

                     
Query: 481 acatttcagt 490
           ||||||||||
Sbjct: 684 acatttcagt 693


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 893
Length adjustment: 10
Effective length of query: 480
Effective length of database: 883
Effective search space:   423840
Effective search space used:   423840
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)