Query= MSMg01no383_d06.b1 MSMg01no383_d06.b1 CHROMAT_FILE:
MSMg01no383_d06.b1 PHD_FILE: MSMg01no383_d06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:25:12 2005
(537 letters)
>mm_chr1_4546255_4547191
Length = 937
Score = 992 bits (513), Expect = 0.0
Identities = 528/533 (99%)
Strand = Plus / Plus
Query: 5 gaattctctgttttgctctgttccccattttctaatagggttattttgttctctggagtc 64
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 205 gaattctctgttttgctctgttccccatcttctaatagggttattttgttctctggagtc 264
Query: 65 taacttcttgagttctttgtatatattggatattagccttctatcagatataggattggt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 taacttcttgagttctttgtatatattggatattagccttctatcagatataggattggt 324
Query: 125 aaagatctttttccaataaaattacttctttaaatattgaatttgagaaacatttagaaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aaagatctttttccaataaaattacttctttaaatattgaatttgagaaacatttagaaa 384
Query: 185 tcttttgttgctgttgttggtggtggtgtatttttgaaataggtctcactatgtagctct 244
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tcttttgttgctgttgttgttggtggtgtatttttgaaataggtctcactatgtagctct 444
Query: 245 ggccattctcactatgtagaccaggctggcatcgaactcaaagagatcctcctgacactg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ggccattctcactatgtagaccaggctggcatcgaactcaaagagatcctcctgacactg 504
Query: 305 cctcccaagtgtttgaattaaggtatatgccacaacacctggctaatctttatgattctt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cctcccaagtgtttgaattaaggtatatgccacaacacctggctaatctttatgattctt 564
Query: 365 ccaaaaaagttttacatacaatttatcagtctaaatttaaacttgagattcctgtttcag 424
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 565 ccaaaaaagttttacatacaatttatcagtctgaatttaaacttgagattcctgtttcag 624
Query: 425 tctcttaaatgcaggaatctcatgaccctctaagcatttataaacactatacaaaagcat 484
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 625 tctcttaaatgcaggaatctcatgaccctctaagcgtttataaacactatacaaaagcat 684
Query: 485 cacttgtacttgaacaaggcagtttgattaattgcctttaaatattttcagat 537
||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 685 cacttgtacttgaacaaggcagtttgattaattacctttaaatattttcagat 737
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 537
Length of database: 937
Length adjustment: 10
Effective length of query: 527
Effective length of database: 927
Effective search space: 488529
Effective search space used: 488529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no383_d06.g1 MSMg01no383_d06.g1 CHROMAT_FILE:
MSMg01no383_d06.g1 PHD_FILE: MSMg01no383_d06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:25:12 2005
(492 letters)
>mm_chr1_4764705_4765596
Length = 892
Score = 878 bits (454), Expect = 0.0
Identities = 475/482 (98%)
Strand = Plus / Minus
Query: 1 acgtggtccactctagtccttgtgccagtcacaaggcgtggagcgctccagtggaggtgg 60
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 acgtggtccactctagcccttgtgccagtcacaaggcgtggagcgctccagtggaggtgg 423
Query: 61 tagcagtttgtatcccttgagactctaccttaaaaagcaataagtcttgagtgtaggtct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 tagcagtttgtatcccttgagactctaccttaaaaagcaataagtcttgagtgtaggtct 363
Query: 121 gtccttcctggaatgtggcctcagctttcgctgtgcacacatcctgtaatgttactatgg 180
|||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct: 362 gtccttcctggaatgtggcctcagctttcggtgtgcacacatcctgtaatgtaactatgg 303
Query: 181 ggtgtgctgtagcccaaggaaagctattgccttgcctcgtgcaggaggctttggtgacca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 ggtgtgctgtagcccaaggaaagctattgccttgcctcgtgcaggaggctttggtgacca 243
Query: 241 aactctaaaaacacttgagttagtgttttaaaacaatttttattgccaggcatagttagt 300
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 242 aactctaaaaacacttgagttagtgttttaaaacaatttttagtgccaggcatagttagt 183
Query: 301 tgtacacgcctttaatctcagctcccagaaggcagagaggcaggtatatctctgagctta 360
||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 tgtacactactttaatcccagctcccagaaggcagagaggcaggtatatctctgagctta 123
Query: 361 aggccaacctgctctataaagtgagaccctgtctccaaaagccaaagcaaacagcagaca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 aggccaacctgctctataaagtgagaccctgtctccaaaagccaaagcaaacagcagaca 63
Query: 421 gttctagagttcggagacagatgggcaaagggttgaagtttaaactttaaagcgtttgtg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 gttctagagttcggagacagatgggcaaagggttgaagtttaaactttaaagcgtttgtg 3
Query: 481 ag 482
||
Sbjct: 2 ag 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 892
Length adjustment: 10
Effective length of query: 482
Effective length of database: 882
Effective search space: 425124
Effective search space used: 425124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
