Query= MSMg01no383_j16.b1 MSMg01no383_j16.b1 CHROMAT_FILE:
MSMg01no383_j16.b1 PHD_FILE: MSMg01no383_j16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:25:41 2005
(516 letters)
>mm_chr1_64855610_64856527
Length = 918
Score = 832 bits (430), Expect = 0.0
Identities = 449/462 (97%), Gaps = 13/462 (2%)
Strand = Plus / Minus
Query: 68 ttgtttgttttagcactgcctgagcagtggcattaaagtcagtgcattctgatcacatgt 127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 918 ttgtttgttttagcactgcctgagcagtggcattaaagtcagtgcattctgatcacatgt 859
Query: 128 gatggtgcatacctttagtcccagcagaggcaaatggatccatgtgagtttgaggccagc 187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 858 gatggtgcatacctttagtcccagcagaggcaaatggatccatgtgagtttgaggccagc 799
Query: 188 ctagtctacattctgagttccagaccagccaaggctacatagtgagaccccgtgttt--- 244
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 ctagtctacattctgagttccagaccagccaaggctacatagtgagaccccgtgtttaaa 739
Query: 245 --------aaaaaaaaaaaaaagctgattattttctgttgttctatttgca-ttttactt 295
||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 738 aaaaaaaaaaaaaaaaaaaaaagctgattattttctgttgttctatttgcatttttactt 679
Query: 296 gcccaccaacagggcatatggagagcatctatggagagtaaatgtccaataaagctgtca 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 gcccaccaacagggcatatggagagcatctatggagagtaaatgtccaataaagctgtca 619
Query: 356 catatgtgccaaaataataaactgcacatttgccagcaacctggc-aaaagttttccatt 414
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 618 catatgtgccaaaataataaactgcacatttgccagcaacctggcaaaaagttttccatt 559
Query: 415 tacctagttcagttcattatatttttaagagaattgcgtgttaaatgtttggtctgcatt 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 tacctagttcagttcattatatttttaagagaattgcgtgttaaatgtttggtctgcatt 499
Query: 475 gtggggtggggaagggggcagggtacaggtgaactgagcttg 516
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 gtggggtggggaagggggcagggtacaggtgaactgagcttg 457
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 5
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 516
Length of database: 918
Length adjustment: 10
Effective length of query: 506
Effective length of database: 908
Effective search space: 459448
Effective search space used: 459448
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no383_j16.g1 MSMg01no383_j16.g1 CHROMAT_FILE:
MSMg01no383_j16.g1 PHD_FILE: MSMg01no383_j16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:25:41 2005
(551 letters)
>mm_chr1_64686153_64687103
Length = 951
Score = 1006 bits (520), Expect = 0.0
Identities = 544/552 (98%), Gaps = 1/552 (0%)
Strand = Plus / Plus
Query: 1 tttcatcaattcaaggctctgaatttaatctccaggaagaaaagaaaggagaatgcaagg 60
||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |
Sbjct: 201 tttcatcaattcaaggctctgaattcaatctccaggaagaaaataaaggagaatgcaaag 260
Query: 61 gagcaagtctttaaaggtaataatcaggcaaatctgtgacaacttcattatcaatcttgt 120
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 261 gagcaagtctttaaaggtaataatcaggcaaatctatgacaacttcattatcaatcttgt 320
Query: 121 ggtttaggaaagagatttcaaggtttccactgtaaaataattttataattttataataat 180
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggtttaggaaacagatttcaaggtttccactgtaaaataattttataattttataataat 380
Query: 181 gttttctctatgctttcaaagagaaattatctctatgtcttcattttatcttaagtaaca 240
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gttttgtctatgctttcaaagagaaattatctctatgtcttcattttatcttaagtaaca 440
Query: 241 atactaattactaaaaacttgatctttttctttactttgtgagcaatcctaacatatggt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atactaattactaaaaacttgatctttttctttactttgtgagcaatcctaacatatggt 500
Query: 301 taaattataaattcaatagtaaccagaaaaatatgtgccaaattaatgagtttcaatttt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taaattataaattcaatagtaaccagaaaaatatgtgccaaattaatgagtttcaatttt 560
Query: 361 tttt-aacccacactaagaagtattttactttgtcttgtttagagtaacttagtattata 419
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttttaacccacactaagaagtattttactttgtcttgtttagagtaacttagtattata 620
Query: 420 agaacaatttaaacattaatggaagactcatgacttgacataccaacttctatatagcta 479
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 621 agaacaatttaaacattaatggaagactcatgacttgacataccaacttatatatagcta 680
Query: 480 caataatatactcctataatttgaaagtgtgctgtaatgcattgactaatggtgtaatgc 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 caataatatactcctataatttgaaagtgtgctgtaatgcattgactaatggtgtaatgc 740
Query: 540 attgatttggtt 551
||||||||||||
Sbjct: 741 attgatttggtt 752
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 551
Length of database: 951
Length adjustment: 10
Effective length of query: 541
Effective length of database: 941
Effective search space: 509081
Effective search space used: 509081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
