BAC Information

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BAC

Clone NameMSMg01-383L17
Chromosome1 (Build37)
Map Location 151,198,583 - 151,395,245
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100042792, LOC435647
Downstream geneLOC100042813, Pla2g4a, Ptgs2, LOC676712, LOC100043257, LOC100043261, Pdc, BC003331, Tpr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-383L17.T7 (MSMg01no383_l17.b1)MSMg01-383L17.TJ (MSMg01no383_l17.g1)
ACCAG487333AG487334
length759755
length of high quality
(start - end)		492 (41 - 532)545 (69 - 613)
definitionCHROMAT_FILE: MSMg01no383_l17.b1 PHD_FILE: MSMg01no383_l17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:25:51 2005CHROMAT_FILE: MSMg01no383_l17.g1 PHD_FILE: MSMg01no383_l17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:25:51 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(151,198,583 - 151,199,070)(151,394,701 - 151,395,245)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TTTTCAGATGTGGTAGAAGTCATCCATTCTTTCCATTCATTATCTTATTT
ATGTTATGCAGCTTGAAATATGATTAATATTATCAAGTCTAAAATGTGGA
TTTTGTGGTTTTTGGATAATAAGGCCATATCCTGTCAGACCAGCAGTCAG
AAAGTTTATACCAAACTGAATAATTTCATCCTCTGCCTTAGACAAAAATA
TCCAGCTTAGGGTACCACCTACAGAGGAGCTTAAGGAGGATTTGCTGGAA
CACTGTGAGCTTTTCAAGCCTTTTTAATGGGTAGCTCAAATGCCATTCTA
GTACAGACCATATGTATTTCTAATAATGGTAGCCAGTTCCTCTCTAATTG
GCTGATTAGATTGTTGAGGACACATGTGTCAGTCAAGGTTGCAGAAAGTT
TGGGCATGTATCAGTTGGAAAGGTAAGTCTGCAGGCTCATTAAATAATTT
TCATACTTTTCTTTAAAAAAAAAAAGATACAGCATTAGAAATTGGACCTT
GGATGTATTTGATCCTATTTTTCTTATTCTAAAATTTAATGTCTTATTTC
ATCTGATAGGACAATGCTGTTTCTTTCCCCTTGAAAGTCAACATGATTAT
TTTCCTTAAATTTTAAATGCACGAACTGGCTTTCCCACGGTAAATTTAAA
TTTGGGAGAACAGCGATAAACACCCTCTAAATTCCTGGGGCCCAGGGCCG
GTTCAACTC

CTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCTTGCACTTTAAGTTCCTCAAAGCTCTTCTCA
GCTCTGAGTGGAGAAAGATTTGAACACAACTTCAGAGCCACAGTGCAAAG
GAGACAGGATATACTTCATGTGCTGGGTTTTCTTCTGCGAGGTCAGAATT
TCAGCTTGGGAAGCTCTGTTCTGAAGACAGATGAAGTGGGAGAGCATCTG
TTTATTGTCGTCATCCAATACCAGTGTCCAGAGTGTCTATTAAAGAATAT
TAATGTTACAGGCCAAACATTAAACATCCTGAAGCAGAGCATGAAATTGA
AGTGCAGAATGTTCTCAAAATCATTTACTTTCCTTATTTCTCTCACTGAA
CAAGGACTTGGCATTCTTCCCTCTAGGCATGGAGTCTGTGTTTTTATAAT
GACTTTTCTTTGTTCCAAGCTAATTACTTTAGAATGCTCTGTTACATTTT
GTACTTTTTATTATCCCCCTGGTACAGACCTGAGTTATACAGGGAAGAGA
CTTAGATCACCATGTGACACATGGCAGGTGACTAATACCATTTTGTGATT
GTTATTTTAACTGTAGTGGTACCATTATTTTGAACTTCCATGGACTAGTT
TGAAAGAGTCTATATAAGGCAGAACATGTTGTANGTTGAAATCTTCAAGT
ACAGATACCATTTTAACATCTTGAAAGGATCCTGGGAGGATGATGATTTG
AGCAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no383_l17.b1 MSMg01no383_l17.b1 CHROMAT_FILE:
MSMg01no383_l17.b1 PHD_FILE: MSMg01no383_l17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:25:51 2005
         (492 letters)



>mm_chr1_151198379_151199270
          Length = 892

 Score =  936 bits (484), Expect = 0.0
 Identities = 487/488 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttttcagatgtggtagaagtcatccattctttccattcattatcttatttatgt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttttcagatgtggtagaagtcatccattctttccattcattatcttatttatgt 264

                                                                       
Query: 65  tatgcagcttgaaatatgattaatattatcaagtctaaaatgtggattttgtggtttttg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tatgcagcttgaaatatgattaatattatcaagtctaaaatgtggattttgtggtttttg 324

                                                                       
Query: 125 gataataaggccatatcctgtcagaccagcagtcagaaagtttataccaaactgaataat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gataataaggccatatcctgtcagaccagcagtcagaaagtttataccaaactgaataat 384

                                                                       
Query: 185 ttcatcctctgccttagacaaaaatatccagcttagggtaccacctacagaggagcttaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttcatcctctgccttagacaaaaatatccagcttagggtaccacctacagaggagcttaa 444

                                                                       
Query: 245 ggaggatttgctggaacactgtgagcttttcaagcctttttaatgggtagctcaaatgcc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ggaggatttgctggaacactgtgagcttttcaagcctttttaatgggtagctcaaatgcc 504

                                                                       
Query: 305 attctagtacagaccatatgtatttctaataatggtagccagttcctctctaattggctg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 attctagtacagaccatatgtatttctaataatggtagccagttcctctctaattggctg 564

                                                                       
Query: 365 attagattgttgaggacacatgtgtcagtcaaggttgcagaaagtttgggcatgtatcag 424
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 565 attagattgttgaggacacatgtatcagtcaaggttgcagaaagtttgggcatgtatcag 624

                                                                       
Query: 425 ttggaaaggtaagtctgcaggctcattaaataattttcatacttttctttaaaaaaaaaa 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ttggaaaggtaagtctgcaggctcattaaataattttcatacttttctttaaaaaaaaaa 684

                   
Query: 485 agatacag 492
           ||||||||
Sbjct: 685 agatacag 692


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 892
Length adjustment: 10
Effective length of query: 482
Effective length of database: 882
Effective search space:   425124
Effective search space used:   425124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no383_l17.g1 MSMg01no383_l17.g1 CHROMAT_FILE:
MSMg01no383_l17.g1 PHD_FILE: MSMg01no383_l17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:25:51 2005
         (545 letters)



>mm_chr1_151394501_151395445
          Length = 945

 Score = 1038 bits (537), Expect = 0.0
 Identities = 543/545 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttgcactttaagttcctcaaagctcttctcagctctgagtggagaaagatttgaacaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 cttgcactttaagttcctcaaagctcttctcagctctgagtggagaaagatttgaacaca 686

                                                                       
Query: 61  acttcagagccacagtgcaaaggagacaggatatacttcatgtgctgggttttcttctgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 acttcagagccacagtgcaaaggagacaggatatacttcatgtgctgggttttcttctgc 626

                                                                       
Query: 121 gaggtcagaatttcagcttgggaagctctgttctgaagacagatgaagtgggagagcatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gaggtcagaatttcagcttgggaagctctgttctgaagacagatgaagtgggagagcatc 566

                                                                       
Query: 181 tgtttattgtcgtcatccaataccagtgtccagagtgtctattaaagaatattaatgtta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tgtttattgtcgtcatccaataccagtgtccagagtgtctattaaagaatattaatgtta 506

                                                                       
Query: 241 caggccaaacattaaacatcctgaagcagagcatgaaattgaagtgcagaatgttctcaa 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 505 caggccaaacattaaacatcctgaagcagagcatgaaattgaagtgcagaatgttctcga 446

                                                                       
Query: 301 aatcatttactttccttatttctctcactgaacaaggacttggcattcttccctctaggc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aatcatttactttccttatttctctcactgaacaaggacttggcattcttccctctaggc 386

                                                                       
Query: 361 atggagtctgtgtttttataatgacttttctttgttccaagctaattactttagaatgct 420
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atggagtctgtgtatttataatgacttttctttgttccaagctaattactttagaatgct 326

                                                                       
Query: 421 ctgttacattttgtactttttattatccccctggtacagacctgagttatacagggaaga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctgttacattttgtactttttattatccccctggtacagacctgagttatacagggaaga 266

                                                                       
Query: 481 gacttagatcaccatgtgacacatggcaggtgactaataccattttgtgattgttatttt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gacttagatcaccatgtgacacatggcaggtgactaataccattttgtgattgttatttt 206

                
Query: 541 aactg 545
           |||||
Sbjct: 205 aactg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 545
Length of database: 945
Length adjustment: 10
Effective length of query: 535
Effective length of database: 935
Effective search space:   500225
Effective search space used:   500225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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