BAC Information

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BAC

Clone NameMSMg01-383N09
Chromosome1 (Build37)
Map Location 178,704,712 - 178,894,756
singlet/doubletdoublet
Overlap geneCep170, Sdccag8, LOC666235
Upstream geneWdr64, Exo1, Gm104, Pld5, B020018G12Rik
Downstream geneAkt3, Zfp238, EG631449, LOC100040770, 1700016C15Rik, Adss, EG631584
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-383N09.T7 (MSMg01no383_n09.b1)MSMg01-383N09.TJ (MSMg01no383_n09.g1)
ACCAG487413AG487414
length767765
length of high quality
(start - end)		502 (62 - 563)564 (67 - 630)
definitionCHROMAT_FILE: MSMg01no383_n09.b1 PHD_FILE: MSMg01no383_n09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:25:59 2005CHROMAT_FILE: MSMg01no383_n09.g1 PHD_FILE: MSMg01no383_n09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:25:59 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(178,894,255 - 178,894,756)(178,704,712 - 178,705,275)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTAGG
CAGCTTGCGCTCCAAAGCAAGGAAGGCAGTTTATATTAGCTATAGGGGAG
AAATTCCATTTTAAAAACAGAAAGCCATTTTTCCCTGTAATATAAGAAGA
ATAGACATTTAAGTTCTCAGAAGCTGGGACATCTGAGGGACAAATAGGCC
GTGACAGGGAGCTTATAAGGCAGTGACAACAATGACACTGCACTGACAGA
CATCACAGACAGAATACACACTAAAGACGGAGCCAGAGCACCGGGCCGGC
ACAAGGTGCTTGTCGCAGAGCCTGGTGACCTGAGGCTGGTCCTCTGTGCA
AGGGAGAATAAGCTCCTAGGAGCTGGCTCCCTACTCCTGCACAGGTACCA
GGACTCTGCAGCCTAAAGAATTCAAAACCATAGAGCCGGGCATGGTGGCA
CACGCTTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCGGATTTCTGAG
TTTGAGGCCAGCCTGATCTACAGAGTGAGTTCCAGGACAGCCAGGGCTAC
AGAGAAACCCTGTCTCAAAAAACAAAACAAACAACAAACAAACAAACAAA
CCACCCCATAACTACCAAGCTAATGTAAACAACGGGTTACGTTGATCAGG
ACCTGCTGATGAAGGTTTATCGACTCCTACAAGAAGTGTCTACACATGCT
GGAGGACTGCAGGCACAGAGAAACCTGCCCTTTGGCTTTTGGGTTTTGGC
TTTCTTTTTTTTCTGCG

TTGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCTGGCAAGTCTTGAGTTCCTGGAGAGGCCTTCTT
TGACTTGTGGCGCTGGTCAGAAGTGAATTTTGTCACATGGTCTCTAATAG
TTACTTTTCCTGGCGTACTGTCATCAAATTCAATGGTAAATGAAGCATGC
CCTGCACCTGCTGTATGGGAACTTGGTGTGTCTTTTGTTGGAATCTCATG
AATAGTGCTCTCTGCTATTTGTGATGGCTGCTGGAATTCTTTTGTAGGAA
TTTCAAAATAACTTGGCTCCCTACAGAAGGGAAAAAGTGCTTCTTCACTT
GCAGCCGCAGACTGTCCCTCCACGTGCTTGGCCTCTGTGCTGCACCCTAA
TGAGGAAAAGGAGAGAGAATTCAAAATATTTGGAAGCCTGAAGCATGAGG
GTCATTGGTAATGACCATTACTATTCTGAGAATCAGAAGGCAGATTAACA
GCCTGGATGAAAAGAATTGCACCCGTATGTTAGACAGATGTCACAGACAA
GGAACGGTCTTGACTATGATCAGGAGATGCAAGGTGAACAGCAGCAATGC
CAAAAAAAAGCAAAGCAGGAAAACTCAAGGTGAGAAAGAATTAAAGTATG
GATGGAGATGCTCTGTACATATACACACACTGTTTGATAGAAAAAGCATG
AATAGCCTCCACACGTCACCGAATGGGCTATTTGAAACATTTAGAAAAAA
GTAAGGCTCTAAAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no383_n09.b1 MSMg01no383_n09.b1 CHROMAT_FILE:
MSMg01no383_n09.b1 PHD_FILE: MSMg01no383_n09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:25:59 2005
         (502 letters)



>mm_chr1_178894185_178895086
          Length = 902

 Score =  893 bits (462), Expect = 0.0
 Identities = 492/502 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccaaagcaaggaaggcagtttatattagctataggggagaaattccattttaaaaacaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 572 ccaaagcaaggaaggcagtttatattagctataggggagaaattccattataaaaacaga 513

                                                                       
Query: 61  aagccatttttccctgtaatataagaagaatagacatttaagttctcagaagctgggaca 120
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 aacccatttttccctgtaatataagaagaatagacatttaagttctcagaagctgggaca 453

                                                                       
Query: 121 tctgagggacaaataggccgtgacagggagcttataaggcagtgacaacaatgacactgc 180
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 tctgagggacaaataggccatgacagggagcttataaggcagtgacaacaatgacactgc 393

                                                                       
Query: 181 actgacagacatcacagacagaatacacactaaagacggagccagagcaccgggccggca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 392 actgacagacatcacagacagaatacacactaaagacggagccagagcaccgggctggca 333

                                                                       
Query: 241 caaggtgcttgtcgcagagcctggtgacctgaggctggtcctctgtgcaagggagaataa 300
           |||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 caaggtacttgtcacagagcctggtgacctgaggctggtcctctgtgcaagggagaataa 273

                                                                       
Query: 301 gctcctaggagctggctccctactcctgcacaggtaccaggactctgcagcctaaagaat 360
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 gctcctaggagctcgctccctactcctgcacaggtaccaggactctgcagcctaaagaat 213

                                                                       
Query: 361 tcaaaaccatagagccgggcatggtggcacacgcttttaatcccagcacttgggaggcag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 tcaaaaccatagagccgggcatggtggcacacgcttttaatcccagcacttgggaggcag 153

                                                                       
Query: 421 aggcaggcggatttctgagtttgaggccagcctgatctacagagtgagttccaggacagc 480
           |||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct: 152 aggcaggcggatttctgagtttgaggccagcctggtctacaaagtgagttccaggacagc 93

                                 
Query: 481 cagggctacagagaaaccctgt 502
           |||||| |||||||||||||||
Sbjct: 92  cagggcaacagagaaaccctgt 71


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 502
Length of database: 902
Length adjustment: 10
Effective length of query: 492
Effective length of database: 892
Effective search space:   438864
Effective search space used:   438864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no383_n09.g1 MSMg01no383_n09.g1 CHROMAT_FILE:
MSMg01no383_n09.g1 PHD_FILE: MSMg01no383_n09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:25:59 2005
         (564 letters)



>mm_chr1_178704512_178705475
          Length = 964

 Score = 1075 bits (556), Expect = 0.0
 Identities = 562/564 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctggcaagtcttgagttcctggagaggccttctttgacttgtggcgctggtcagaagtga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctggcaagtcttgagttcctggagaggccttctttgacttgtggcgctggtcagaagtga 260

                                                                       
Query: 61  attttgtcacatggtctctaatagttacttttcctggcgtactgtcatcaaattcaatgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attttgtcacatggtctctaatagttacttttcctggcgtactgtcatcaaattcaatgg 320

                                                                       
Query: 121 taaatgaagcatgccctgcacctgctgtatgggaacttggtgtgtcttttgttggaatct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taaatgaagcatgccctgcacctgctgtatgggaacttggtgtgtcttttgttggaatct 380

                                                                       
Query: 181 catgaatagtgctctctgctatttgtgatggctgctggaattcttttgtaggaatttcaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 catgaatagtgctctctgctatttgtgatggctgctggaattcttttgtaggaatttcaa 440

                                                                       
Query: 241 aataacttggctccctacagaagggaaaaagtgcttcttcacttgcagccgcagactgtc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aataacttggctccctacagaagggaaaaagtgcttcttcacttgcagccgcagactgtc 500

                                                                       
Query: 301 cctccacgtgcttggcctctgtgctgcaccctaatgaggaaaaggagagagaattcaaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cctccacgtgcttggcctctgtgctgcaccctaatgaggaaaaggagagagaattcaaaa 560

                                                                       
Query: 361 tatttggaagcctgaagcatgagggtcattggtaatgaccattactattctgagaatcag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tatttggaagcctgaagcatgagggtcattggtaatgaccattactattctgagaatcag 620

                                                                       
Query: 421 aaggcagattaacagcctggatgaaaagaattgcacccgtatgttagacagatgtcacag 480
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct: 621 aaggcagattaacagcctggatgaaaagaattgcactcgtatgttagacagatgtaacag 680

                                                                       
Query: 481 acaaggaacggtcttgactatgatcaggagatgcaaggtgaacagcagcaatgccaaaaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 acaaggaacggtcttgactatgatcaggagatgcaaggtgaacagcagcaatgccaaaaa 740

                                   
Query: 541 aaagcaaagcaggaaaactcaagg 564
           ||||||||||||||||||||||||
Sbjct: 741 aaagcaaagcaggaaaactcaagg 764


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 964
Length adjustment: 10
Effective length of query: 554
Effective length of database: 954
Effective search space:   528516
Effective search space used:   528516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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