Query= MSMg01no384_c04.b1 MSMg01no384_c04.b1 CHROMAT_FILE:
MSMg01no384_c04.b1 PHD_FILE: MSMg01no384_c04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:26:21 2005
(568 letters)
>mm_chr1_106471751_106472718
Length = 968
Score = 1069 bits (553), Expect = 0.0
Identities = 562/565 (99%)
Strand = Plus / Plus
Query: 4 ggaattccttcttgcattcttcaaatttctcaataaaattgccatattttaagaaaagac 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccttcttgcattcttcaaatttctcaataaaattgccatattttaagaaaagac 263
Query: 64 agtgttaaacctgctatatctgggcctattgtcctccctctgattcggctccttctggag 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 agtgttaaacctgctatatctgggcctattgtcctccctctgattcggctccttctggag 323
Query: 124 attttcagcttttgaaacttttttgactctgtattgaaatcaatgcacacaagctgctga 183
|||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct: 324 attttcagcttttgaaacttttgtgactctgtattgaaatcaatgcacacgagctgctga 383
Query: 184 ctatccagaagtgtcactctctggaggcatttgggtgatttgaatagttttaaggtttta 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ctatccagaagtgtcactctctggaggcatttgggtgatttgaatagttttaaggtttta 443
Query: 244 ttatgatatccaatatatatatacgtgtatatacctcaagatgccaagttaaaaagggtg 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ttatgatatccaatatatatatacgtgtatatacctcaagatgccaagttaaaaagggtg 503
Query: 304 agttacagagaaagagttgaactgagttttaccctttaagaagtacatacggactagaat 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 agttacagagaaagagttgaactgagttttaccctttaagaagtacatacggactagaat 563
Query: 364 gttttttcttatgcaccatggtgaaaacattaaaatgtaaaaatgtctacttaattaaca 423
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 564 gttttttcttatgcaccatggtgaaaacattaaaatgttaaaatgtctacttaattaaca 623
Query: 424 atccactttataacagataacaacataataatttgggaatttatagcactttcacaagta 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 atccactttataacagataacaacataataatttgggaatttatagcactttcacaagta 683
Query: 484 agtattattatcaatcatagggatgaatagaacactacttctatagcaataaagagtaga 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 agtattattatcaatcatagggatgaatagaacactacttctatagcaataaagagtaga 743
Query: 544 agaggagctatgatagcaaattagt 568
|||||||||||||||||||||||||
Sbjct: 744 agaggagctatgatagcaaattagt 768
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 568
Length of database: 968
Length adjustment: 10
Effective length of query: 558
Effective length of database: 958
Effective search space: 534564
Effective search space used: 534564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no384_c04.g1 MSMg01no384_c04.g1 CHROMAT_FILE:
MSMg01no384_c04.g1 PHD_FILE: MSMg01no384_c04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:26:22 2005
(526 letters)
>mm_chr1_106638432_106639357
Length = 926
Score = 445 bits (230), Expect = e-129
Identities = 277/312 (88%), Gaps = 30/312 (9%)
Strand = Plus / Minus
Query: 243 tgaagtctgtgagagaccccttctaaatatgaaggaatccagaagatacttggtgtgcac 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 926 tgaagtctgtgagagaccccttctaaatatgaaggaatccagaagatacttggtgtgcac 867
Query: 303 ttctcatctccaggtacacctttccatatgaataactaacacacacacacacacacagat 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 866 ttctcatctccaggtacacctttccatatgaataactaacacacacacacacacacacac 807
Query: 363 acacac------------------------------atacatccatacacataaacatat 392
|||||| ||||||||||||||||||||||||
Sbjct: 806 acacacacacacacacacagagagagagagagagagatacatccatacacataaacatat 747
Query: 393 acaagtacaatcacacacacaccatgggaaatctagttgggacaatggagtttgtaaagt 452
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 acaagtacaatcacacacacaccatgggaaatctagttgggacaatggagtttgtaaagc 687
Query: 453 tgtttgggacaattttctggtatcttctgaaattcagacggagtttttaaagtttgttat 512
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct: 686 tgtttgggacaattttctggtatcttctgaaattcagatggagtttttaaagtttgtgat 627
Query: 513 ttgatttgatct 524
||||||||||||
Sbjct: 626 ttgatttgatct 615
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 526
Length of database: 926
Length adjustment: 10
Effective length of query: 516
Effective length of database: 916
Effective search space: 472656
Effective search space used: 472656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
