BAC Information

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BAC

Clone NameMSMg01-384E09
Chromosome1 (Build37)
Map Location 195,769,225 - 195,769,350
singlet/doubletsinglet
Overlap genenone
Upstream geneSyt14, AA408296, Irf6, A130010J15Rik, Traf3ip3, Hsd11b1, G0s2, Lamb3, Camk1g, LOC667208
Downstream geneEG623172, Plxna2, Cd34
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-384E09.T7 (MSMg01no384_e09.b1)MSMg01-384E09.TJ (MSMg01no384_e09.g1)
ACCAG487749AG487750
length765789
length of high quality
(start - end)		467 (35 - 501)134 (64 - 197)
definitionCHROMAT_FILE: MSMg01no384_e09.b1 PHD_FILE: MSMg01no384_e09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:26:32 2005CHROMAT_FILE: MSMg01no384_e09.g1 PHD_FILE: MSMg01no384_e09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:26:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTCTGC
TCCCGTGTTTTGTTGCCCACTGTTACTACAAGAATTTCACTTCCCAGTCT
GACTTTGCTGTATTTAAGTTTAACTCTTCTTTCTCCCTCCCTTTCCCTCC
TTTCTTCCCTCCCTTCCTCTGTGTTTTCTTTCTGTGTGTTTGTTCTTCCT
TTTCCCATTTCACCTTCGTTTCTTTTTTTTCCTCATGATTCCTGAGACAG
GGATTTACTCTGTAGACTAGGATGATCTTGGCGTTACTACATAACCCAAG
GTCCTGATGAAGTCAAGTCTTACTGCCACTTTCCTGAAGGTATGTTGTAA
AAGTGTGCCATGTTTATTTCCATTTTTTGTCACTTTCTGTCAGAGGAGAT
ATCTCAGCTGGTAAAGTAACTACTGCATAAGAATGAGGACCTGAGTTTAG
ATCCCTGGGACCCAGATAAAAACCTGATTGTAGATATGGGTGACTGTCTC
AGAACAGGGGAAGAGGAGGGTGCTTGAGATTTGTTAGCCAGCCAGTCTAC
CTGAACTGATGAGCTTCAGGTTTAGTGAGAGACCTCGCCTCACAAAATAC
AGTGGAGAGTGTTTAAAGAAAACAACCAATGTTAGCACTAACCTTTCTTT
CAGGTNTCTTCTCTTTTCTCCCCTTTCTCATGGCCACCCCTAATATACCT
ATATTGTAAATAACCCTCCCAAAAAAGGAGAACACCACAATGGTAGGATG
GCGTAAAATATAGGT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTGAGTACTTGATCACTGAGAAAATCAGCAGAGGAGAG
TATGCAGGAAGACAATGAAGACAAGTTCTGCCTGCAGGAGTATGCAGAAG
AAGCTGCCAAACTTCTTGAATGAGGTGTGTGTGGGGGGGGGGGNATNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTN
NTTTTTTTTTTTTTTTNNTTTTNTTTTTTTTTTTNTNNNNNNNTTTTTTT
TTTTNNNNTNNNNNNNNNNNTNNNNNTTTTTTTTTTTTTCCCTCTTNTTC
TTTTTTTTTTTTTCNCTTTTTCTCCTTTCTTTTTCCTCCTTCTTTCCTTT
CTTTCCTTTTCTTTCCCTTTTCCTCCTTTTTTTCTCCTTCCCTTTTCCTC
TCTTTCTCTTCCTCTTCTCCTTTCTTTTTCTCTTTTTCCTCCTTCTTTTT
TCTTCTTTTTCCCTTCTCCTCCTTTTCTTCTTCTTTTCTTCTCCTTTCTC
CTTCCTCTTCTTTCTTTTTTTTTTTTTCCTCCTTCTTCCTTCTCCCTCCT
TCCTCTCTTCTTCCCCGCTTCCTATCTTTTTCCTCCTCCTTTCTTCCTCC
CCTCTTTCTTTCTTTTCTCTTCTCTTTTTCCTCTCCTCTTTCCTCTCCTT
TTCTTCCGTCCTTCTTTTCCTCTTTTCTCTTCTTTTTTTTTTTTCTTTTC
TCTCCTTCCCTCCGCTCCTTCCTTTTTTCTCCTTCTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no384_e09.g1 MSMg01no384_e09.g1 CHROMAT_FILE:
MSMg01no384_e09.g1 PHD_FILE: MSMg01no384_e09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:26:32 2005
         (134 letters)



>mm_chr1_195769025_195769556
          Length = 532

 Score =  234 bits (121), Expect = 2e-66
 Identities = 126/129 (97%), Gaps = 3/129 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgagtacttgatcactgagaaaatcagcagaggagagtatgcaggaagacaatgaagaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 tgagtacttgatcactgagaaaatcagcagaggagagtatgcaggaagacaatgaagaca 267

                                                                       
Query: 61  agttctgcctgcaggagtatgcagaagaagctgccaaacttcttgaatgaggtgtgtgtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |
Sbjct: 266 agttctgcctgcaggagtatgcagaagaagctgccaaacttcttgaatgaggtgtg---g 210

                    
Query: 121 ggggggggg 129
           |||||||||
Sbjct: 209 ggggggggg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 134
Length of database: 532
Length adjustment: 8
Effective length of query: 126
Effective length of database: 524
Effective search space:    66024
Effective search space used:    66024
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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