XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAAG
ATAAAGATTTCTGTAGCTTGCTGGTAGCGAGTTGTCAAAACTCACCTCTC
AACTTTTCCTTTTGGATTCTGTAGTTGCCAGACACAAATCCTACATGCTT
GACAAGATACATAGTTTCACTGAAAATAAATAATTTAGATAAAAATCAAA
ATATCTCACATGATATGTACTCACTGATAAGTGGATAGTAGCCCAGAAAC
TTAGAATACCCAAGATATAAAATACAATTTGCAAAACATTTGAAACTCAA
GAAGAACGAAGACCAAAATGTGGAGACTTTGCCCCTTCATAGAATTGGGA
AAAAAACACCCATGGAAGGAGTTACAGAGACAAAGTTTGAAGCTGAGATG
AAAGGATGGACTATCTAGAGCCTGCCATACCTGGGGATCCATCCCGTAAT
CAGCCTCCAAATGCTGACACCATTGCATACACTAGCAAGATTTTGCTGAA
AGGACCCTTATATAGCTGTCTCTTTTGAGACTATGCTGGGTCCTAGCAAA
CACAGAAATGGATGCTCACAGTCAGTATTGGATAGATCACAGAGCACCCA
ATGGAGGATCTAGAGAANATACCCAAGGAGCTAAAGGGATCTGCATCCCC
ATAGGTGGAACAACAATATGAACTAACCAGTACCCCCCAGAGCTTGTGTC
TCTAGCTGCATATGTGTGAGAAGATGGCCTACT

TGGATGGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTTAACTTATGGATTTCTCACAACAGGACATGCGA
AATGTGGGGATTCAGATGCCATAAGTTAGCCATTTGACTTATAGAATCAA
CAAAGGCATTATAAAGAATTAACCTGGTATGGAAAGTCTCTGAAATCTGG
CCCAAAGCATAATACAAGACCTGTTGTCTGCCGGCAATGACTTCTGCTTT
GCTAAACACAGATATGTTCACACTGAATGCTGCTACCCATTAAAGTGATG
TCTGTGTACCTTCTAAACTCTTCCTCTAATATTTATAGTACTTTTAATGT
ATGCCTTATCTTTTCATCTAATCTTAACATCAACCCTTAAACTTTCGTTA
TCCATTGATCCTCCTTTAGTACACCACATTTTCATTTCTATATTCCCATT
TTGTCCCCTCTTTTACTTTTAACTTTCCTTCCTTCCCCTTGTTTTGTTTA
CCCCTTTCTTCCCCCTCCTAATGCCTGATCCATTCCATTTCTCGTACTCC
TTCTTTCATACCCTCCTCACCACCCATTTCTCCTCCTTTTTTTGCTTTTC
CCCCATTCTCCCTTATCTCTCTCTTCCTTTTTTCCCTATTTTTCTCCTCC
CCCCCTTTTTTTTTTCCCCCCTAATATTTATTTATTACACCTTATATTAA
TAATTTTTTTCCCCCTTATTCCCTTTATTATTTCTCATG

Query= MSMg01no384_i12.b1 MSMg01no384_i12.b1 CHROMAT_FILE:
MSMg01no384_i12.b1 PHD_FILE: MSMg01no384_i12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:26:51 2005
         (576 letters)



>mm_chr1_109056434_109057412
          Length = 979

 Score =  938 bits (485), Expect = 0.0
 Identities = 552/575 (96%), Gaps = 3/575 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattc-aagataaagatttctgtagcttgctggtagcgagttgtcaaaactcacctctc 63
           |||||| |||||||||||||||||||||||||| |||| ||||||||||| |||||||||
Sbjct: 205 gaattccaagataaagatttctgtagcttgctgttagctagttgtcaaaaatcacctctc 264

                                                                       
Query: 64  aacttttcctttt--ggattctgtagttgccagacacaaatcctacatgcttgacaagat 121
           |||||||||||||  |||||||||||||||||||||||||||||||||||||| | ||||
Sbjct: 265 aacttttccttttttggattctgtagttgccagacacaaatcctacatgcttgtccagat 324

                                                                       
Query: 122 acatagtttcactgaaaataaataatttagataaaaatcaaaatatctcacatgatatgt 181
           ||||| ||| | ||||||||| ||||||||||||||||||||||| ||||||| ||||||
Sbjct: 325 acataatttaattgaaaataattaatttagataaaaatcaaaataactcacattatatgt 384

                                                                       
Query: 182 actcactgataagtggatagtagcccagaaacttagaatacccaagatataaaatacaat 241
           ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct: 385 actcactgataagtggatattagcccagaaacttagaatacccaagatagaaaatacaat 444

                                                                       
Query: 242 ttgcaaaacatttgaaactcaagaagaacgaagaccaaaatgtggagactttgccccttc 301
           |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttgcgaaacacttgaaactcaagaagaacgaagaccaaaatgtggagactttgccccttc 504

                                                                       
Query: 302 atagaattgggaaaaaaacacccatggaaggagttacagagacaaagtttgaagctgaga 361
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 atagaattgggaacaaaacacccatggaaggagttacagagacaaagtttgaagctgaga 564

                                                                       
Query: 362 tgaaaggatggactatctagagcctgccatacctggggatccatcccgtaatcagcctcc 421
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cgaaaggatggactatctagagcctgccatacctggggatccatcccgtaatcagcctcc 624

                                                                       
Query: 422 aaatgctgacaccattgcatacactagcaagattttgctgaaaggacccttatatagctg 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aaatgctgacaccattgcatacactagcaagattttgctgaaaggacccttatatagctg 684

                                                                       
Query: 482 tctcttttgagactatgctgggtcctagcaaacacagaaatggatgctcacagtcagtat 541
           |||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 685 tctcttgtgagactatgctgggtcctagcaaacacagaagtggatgctcacagtcagtat 744

                                              
Query: 542 tggatagatcacagagcacccaatggaggatctag 576
           ||||||||||||||||| |||||||||||||||||
Sbjct: 745 tggatagatcacagagcccccaatggaggatctag 779


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 576
Length of database: 979
Length adjustment: 10
Effective length of query: 566
Effective length of database: 969
Effective search space:   548454
Effective search space used:   548454
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)