Query= MSMg01no384_j16.b1 MSMg01no384_j16.b1 CHROMAT_FILE:
MSMg01no384_j16.b1 PHD_FILE: MSMg01no384_j16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:26:56 2005
(442 letters)
>mm_chr1_28775276_28776117
Length = 842
Score = 766 bits (396), Expect = 0.0
Identities = 430/445 (96%), Gaps = 6/445 (1%)
Strand = Plus / Minus
Query: 4 ggaattcactacattgtcatgcttgttgagggatgtatggaagtcattgctgatagatag 63
||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 ggaattcacgacattggaatgcttgttgagggatgtatggaagtcattgctgatagatag 482
Query: 64 catcttttccactataaatgcctccctcactattgaggttagagtctgatctggtctagt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 catcttttccactataaatgcctccctcactattgaggttagagtctgatctggtctagt 422
Query: 124 attaccataatacctctcccaatttagacacaaatggtatttgactgtacaaagtcctgt 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 attaccataatacctctcccaatttagacacaaatggtatttgactgtacaaagtcctgt 362
Query: 184 aaatattgatccagattttcagtagagctctacaattccttctcaaacaaatatttttga 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 aaatattgatccagattttcagtagagctctacaattccttctcaaacaaatatttttga 302
Query: 244 gattacaatttagtcaaataatttaagctttattttctttctataactccaatgaactta 303
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 301 gattacaatttagtcaaataatttaagctttattttctttctccaactccaatgaactta 242
Query: 304 tctttgtgctgattataattaatattttccttaattac------gtgtgtgtgtgtgtgt 357
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 241 tctttgtgctgattataattaatattttccttaattacgtgtgtgtgtgtgtgtgtgtgt 182
Query: 358 gtgtgtgtgtgtgtgtgtgccantacccatgtgcacatgtgtttctttttaagtggtcat 417
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct: 181 gtgtgtgtgtgtgtgtgtgccagtacccatgtgcacatgtgtttctttttaagtggccat 122
Query: 418 taacttagagtgcgaggatacccta 442
||||| ||||||| |||||||||||
Sbjct: 121 taactcagagtgcaaggatacccta 97
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 44
Number of extensions: 10
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 442
Length of database: 842
Length adjustment: 9
Effective length of query: 433
Effective length of database: 833
Effective search space: 360689
Effective search space used: 360689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no384_j16.g1 MSMg01no384_j16.g1 CHROMAT_FILE:
MSMg01no384_j16.g1 PHD_FILE: MSMg01no384_j16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:26:56 2005
(549 letters)
>mm_chr1_28604011_28604958
Length = 948
Score = 890 bits (460), Expect = 0.0
Identities = 525/548 (95%), Gaps = 4/548 (0%)
Strand = Plus / Plus
Query: 1 tcaactgagcaatcctgaatggctgagaagcacctgaaaaaaa---gtttaaacatctct 57
||||||||| |||||||||||||| |||||||||||||||||| | ||||||||||||
Sbjct: 198 tcaactgaggaatcctgaatggctaagaagcacctgaaaaaaaaaaggttaaacatctct 257
Query: 58 aattatcaggaaaagaaactcaatactgtttttgaaaaatgagcatagataaaattaaca 117
||| ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct: 258 aatcatcaggaaaagaaacacaatactgtttttgaaaaatgagcatagatagaattaaca 317
Query: 118 ccctcttgcagtgttctagaatatgtgaaggaatatgtaagaattcattgaatttcaaac 177
|||||||||| ||||||||||||||| ||||||||||||||| ||||||||||| |||||
Sbjct: 318 ccctcttgcaatgttctagaatatgtaaaggaatatgtaagatttcattgaattccaaac 377
Query: 178 tgaacagtaaattcaaataagcataatttagccaataactatttcaaatgaaaacacctt 237
||||||||||||| || ||||||||| ||||||||||||||||||||||| |||||||||
Sbjct: 378 tgaacagtaaatttaagtaagcataacttagccaataactatttcaaatgcaaacacctt 437
Query: 238 tctttgtctcacagtgtaaagaatagaaagtgatgatgtctatggatgaaccttagatgt 297
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 438 -ctttgtctcacagtgtaaagaatagaaagtgatgaagtctatggatgaaccttagatgt 496
Query: 298 tacaatgttgtattttaataaatataaaaattatggttaaatataatttttgaattatag 357
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 497 tacaatgttgtattttaataaatataaacattatggttaaatataatttttgaattatag 556
Query: 358 ttacctaagacacaataggttaaataacatttatattgatgtaattttatataccagagt 417
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 ttacctaaaacacaataggttaaataacatttatattgatgtaattttatataccagagt 616
Query: 418 attcaataaaacctgagaaatgtttgaagtttctcatcaatagaaataaatgacattgtc 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 617 attcaataaaacctgagaaatgtttgaagtttctcatcaatagaaataaatgacagtgtc 676
Query: 478 tggaaagggggagaacaagatttgattataaatatatatgatattaacatacatattaac 537
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 677 tggaaagggggagaacaagatttgattataaatatatatgatatgaacatacatattaac 736
Query: 538 ataggcta 545
||||||||
Sbjct: 737 ataggcta 744
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 549
Length of database: 948
Length adjustment: 10
Effective length of query: 539
Effective length of database: 938
Effective search space: 505582
Effective search space used: 505582
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
