Query= MSMg01no384_k12.b1 MSMg01no384_k12.b1 CHROMAT_FILE:
MSMg01no384_k12.b1 PHD_FILE: MSMg01no384_k12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:27:00 2005
(346 letters)
>mm_chr1_179738438_179739182
Length = 745
Score = 493 bits (255), Expect = e-144
Identities = 329/381 (86%), Gaps = 47/381 (12%)
Strand = Plus / Minus
Query: 4 ggaattcatctgtgtaacagaaagctgggcttcaaaacccagcagcaaacggaaaagaaa 63
|||||||||||| | || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 ggaattcatctg-ggaagggaaagctgggcttcaaaacccagcagcaaacggaaaagaaa 668
Query: 64 aagattagtgtatggtgggatatgctcaaaacaaatacattactttcattcatat----- 118
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 aagattagtgtatggtgggatatgctcaaaacaaatacattactttcattcatatataca 608
Query: 119 ---------------atacatacatatata-----------------------a-atata 139
||||||||||||||| | |||||
Sbjct: 607 tacatacatacatacatacatacatatatatatatatatatatatatatatatatatata 548
Query: 140 tatatatagttatcatccatctgtctgctgccccctcccccttcttctaattttctttta 199
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 547 tatatatagttatcatccatctgtctgcttccccctcccccttcttctaattttctttta 488
Query: 200 aataatctaaggcagcagcaagaaggtgccactgcccttctgcagaacaggttttcagag 259
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 487 aataatctaaggcagcagcaagaagatgccactgcccttctgcagaacaggttttcagag 428
Query: 260 ggctgactcatctctaaagactccagagggaactcaggccatccgctggggaggtgggga 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 ggctgactcatctctaaagactccagagggaactcaggccatccgctggggaggtgggga 368
Query: 320 ccaagcgggg-ggnggggggg 339
|||||||||| || |||||||
Sbjct: 367 ccaagcggggagg-ggggggg 348
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 346
Length of database: 745
Length adjustment: 9
Effective length of query: 337
Effective length of database: 736
Effective search space: 248032
Effective search space used: 248032
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no384_k12.g1 MSMg01no384_k12.g1 CHROMAT_FILE:
MSMg01no384_k12.g1 PHD_FILE: MSMg01no384_k12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:27:00 2005
(565 letters)
>mm_chr1_179562142_179563106
Length = 965
Score = 1040 bits (538), Expect = 0.0
Identities = 558/565 (98%)
Strand = Plus / Plus
Query: 1 ctctaatgatcacattatcatactgttttattttattagaagtctcactggggacatgaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctctaatgatcacattatcatactgttttattttattagaagtctcactggggacatgaa 260
Query: 61 aaaaacattatcgactgcccataagtcaacgaaatagaagaaaatcagccctttagatgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaaacattatcgactgcccataagtcaacgaaatagaagaaaatcagccctttagatgc 320
Query: 121 gcacggctccttcctcttagtgttcgtgcgtgtcaaaaccagaaacagtactgatgggaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcacggctccttcctcttagtgttcgtgcgtgtcaaaaccagaaacagtactgatgggaa 380
Query: 181 agcgtcagattttgataactgtgatgacattttgttaaaaagtaattaaaatgctgaggg 240
||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 381 agcatcagattttgataactgtgatgatattttgttaaaaagtaattaaaatgctgaggg 440
Query: 241 aaattagggagtaaaacctttttctcctgttatgggactgcatttttatcagttacatcc 300
||||||| |||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct: 441 aaattagtgagtaaaacctttttctcctgtcataggactgcatttttatcagttacatcc 500
Query: 301 ttggtcaaggactcctcaatcaagttctgtcaataggacttttgctacgttcttcagaga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttggtcaaggactcctcaatcaagttctgtcaataggacttttgctacgttcttcagaga 560
Query: 361 aactgctggctgccctgttctctggagtagcagcaagctgaacaagccaaggccactcca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aactgctggctgccctgttctctggagtagcagcaagctgaacaagccaaggccactcca 620
Query: 421 gtatttctctgtcttactttgtcacaacatatgaccccctaaagagacctcagcctttcc 480
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 621 gtatttctctgtcttactttgtcacaacatatgaccccctaaagagacctcatcctttcc 680
Query: 481 gttttctgtattcacaacttcctacatcttttanactctaatggaccctctcagacatcc 540
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 681 gttttctgtattcacaacttcctacatcttttaaactctaatggaccctctcagacatcc 740
Query: 541 agagagagctcgccaaactccaaag 565
|||||||||||||||||||||||||
Sbjct: 741 agagagagctcgccaaactccaaag 765
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 565
Length of database: 965
Length adjustment: 10
Effective length of query: 555
Effective length of database: 955
Effective search space: 530025
Effective search space used: 530025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
