BAC Information

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BAC

Clone NameMSMg01-384K12
Chromosome1 (Build37)
Map Location 179,562,342 - 179,739,163
singlet/doubletdoublet
Overlap gene1700016C15Rik, Adss
Upstream geneCep170, Sdccag8, LOC666235, Akt3, Zfp238, EG631449, LOC100040770
Downstream geneEG631584, EG545391, LOC666262, 5830417C01Rik, LOC666284, 4930527J03Rik, LOC666295, B230369F24Rik, LOC669454, 2310005N03Rik, Hnrpu, Efcab2, D230039L06Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-384K12.T7 (MSMg01no384_k12.b1)MSMg01-384K12.TJ (MSMg01no384_k12.g1)
ACCAG488041AG488042
length735729
length of high quality
(start - end)
346 (38 - 383)565 (85 - 649)
definitionCHROMAT_FILE: MSMg01no384_k12.b1 PHD_FILE: MSMg01no384_k12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:27:00 2005CHROMAT_FILE: MSMg01no384_k12.g1 PHD_FILE: MSMg01no384_k12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:27:00 2005
singlet/doubletdoubletdoublet
BLAST hitpluralunique
Map location.(179,738,785 - 179,739,163)(179,562,342 - 179,562,906)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATC
TGTGTAACAGAAAGCTGGGCTTCAAAACCCAGCAGCAAACGGAAAAGAAA
AAGATTAGTGTATGGTGGGATATGCTCAAAACAAATACATTACTTTCATT
CATATATACATACATATATAAATATATATATATAGTTATCATCCATCTGT
CTGCTGCCCCCTCCCCCTTCTTCTAATTTTCTTTTAAATAATCTAAGGCA
GCAGCAAGAAGGTGCCACTGCCCTTCTGCAGAACAGGTTTTCAGAGGGCT
GACTCATCTCTAAAGACTCCAGAGGGAACTCAGGCCATCCGCTGGGGAGG
TGGGGACCAAGCGGGGGGNGGGGGGGGGGNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXCATGACTCAGCACATGTGCACTCTAATGATCACATT
ATCATACTGTTTTATTTTATTAGAAGTCTCACTGGGGACATGAAAAAAAC
ATTATCGACTGCCCATAAGTCAACGAAATAGAAGAAAATCAGCCCTTTAG
ATGCGCACGGCTCCTTCCTCTTAGTGTTCGTGCGTGTCAAAACCAGAAAC
AGTACTGATGGGAAAGCGTCAGATTTTGATAACTGTGATGACATTTTGTT
AAAAAGTAATTAAAATGCTGAGGGAAATTAGGGAGTAAAACCTTTTTCTC
CTGTTATGGGACTGCATTTTTATCAGTTACATCCTTGGTCAAGGACTCCT
CAATCAAGTTCTGTCAATAGGACTTTTGCTACGTTCTTCAGAGAAACTGC
TGGCTGCCCTGTTCTCTGGAGTAGCAGCAAGCTGAACAAGCCAAGGCCAC
TCCAGTATTTCTCTGTCTTACTTTGTCACAACATATGACCCCCTAAAGAG
ACCTCAGCCTTTCCGTTTTCTGTATTCACAACTTCCTACATCTTTTANAC
TCTAATGGACCCTCTCAGACATCCAGAGAGAGCTCGCCAAACTCCAAAGA
GACGGGGATGAAAGTAGCCTGTTGACTTCTCCATCATTTGAGTCAGGAGC
ATGCAAAGGACTCCATGAAATCTGCCTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no384_k12.b1 MSMg01no384_k12.b1 CHROMAT_FILE:
MSMg01no384_k12.b1 PHD_FILE: MSMg01no384_k12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:27:00 2005
         (346 letters)



>mm_chr1_179738438_179739182
          Length = 745

 Score =  493 bits (255), Expect = e-144
 Identities = 329/381 (86%), Gaps = 47/381 (12%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcatctgtgtaacagaaagctgggcttcaaaacccagcagcaaacggaaaagaaa 63
           |||||||||||| | ||  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 ggaattcatctg-ggaagggaaagctgggcttcaaaacccagcagcaaacggaaaagaaa 668

                                                                       
Query: 64  aagattagtgtatggtgggatatgctcaaaacaaatacattactttcattcatat----- 118
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||     
Sbjct: 667 aagattagtgtatggtgggatatgctcaaaacaaatacattactttcattcatatataca 608

                                                                       
Query: 119 ---------------atacatacatatata-----------------------a-atata 139
                          |||||||||||||||                       | |||||
Sbjct: 607 tacatacatacatacatacatacatatatatatatatatatatatatatatatatatata 548

                                                                       
Query: 140 tatatatagttatcatccatctgtctgctgccccctcccccttcttctaattttctttta 199
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 547 tatatatagttatcatccatctgtctgcttccccctcccccttcttctaattttctttta 488

                                                                       
Query: 200 aataatctaaggcagcagcaagaaggtgccactgcccttctgcagaacaggttttcagag 259
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 487 aataatctaaggcagcagcaagaagatgccactgcccttctgcagaacaggttttcagag 428

                                                                       
Query: 260 ggctgactcatctctaaagactccagagggaactcaggccatccgctggggaggtgggga 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 ggctgactcatctctaaagactccagagggaactcaggccatccgctggggaggtgggga 368

                                
Query: 320 ccaagcgggg-ggnggggggg 339
           |||||||||| || |||||||
Sbjct: 367 ccaagcggggagg-ggggggg 348


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 346
Length of database: 745
Length adjustment: 9
Effective length of query: 337
Effective length of database: 736
Effective search space:   248032
Effective search space used:   248032
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no384_k12.g1 MSMg01no384_k12.g1 CHROMAT_FILE:
MSMg01no384_k12.g1 PHD_FILE: MSMg01no384_k12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:27:00 2005
         (565 letters)



>mm_chr1_179562142_179563106
          Length = 965

 Score = 1040 bits (538), Expect = 0.0
 Identities = 558/565 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctctaatgatcacattatcatactgttttattttattagaagtctcactggggacatgaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctctaatgatcacattatcatactgttttattttattagaagtctcactggggacatgaa 260

                                                                       
Query: 61  aaaaacattatcgactgcccataagtcaacgaaatagaagaaaatcagccctttagatgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaaacattatcgactgcccataagtcaacgaaatagaagaaaatcagccctttagatgc 320

                                                                       
Query: 121 gcacggctccttcctcttagtgttcgtgcgtgtcaaaaccagaaacagtactgatgggaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcacggctccttcctcttagtgttcgtgcgtgtcaaaaccagaaacagtactgatgggaa 380

                                                                       
Query: 181 agcgtcagattttgataactgtgatgacattttgttaaaaagtaattaaaatgctgaggg 240
           ||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 381 agcatcagattttgataactgtgatgatattttgttaaaaagtaattaaaatgctgaggg 440

                                                                       
Query: 241 aaattagggagtaaaacctttttctcctgttatgggactgcatttttatcagttacatcc 300
           ||||||| |||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct: 441 aaattagtgagtaaaacctttttctcctgtcataggactgcatttttatcagttacatcc 500

                                                                       
Query: 301 ttggtcaaggactcctcaatcaagttctgtcaataggacttttgctacgttcttcagaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttggtcaaggactcctcaatcaagttctgtcaataggacttttgctacgttcttcagaga 560

                                                                       
Query: 361 aactgctggctgccctgttctctggagtagcagcaagctgaacaagccaaggccactcca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aactgctggctgccctgttctctggagtagcagcaagctgaacaagccaaggccactcca 620

                                                                       
Query: 421 gtatttctctgtcttactttgtcacaacatatgaccccctaaagagacctcagcctttcc 480
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 621 gtatttctctgtcttactttgtcacaacatatgaccccctaaagagacctcatcctttcc 680

                                                                       
Query: 481 gttttctgtattcacaacttcctacatcttttanactctaatggaccctctcagacatcc 540
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 681 gttttctgtattcacaacttcctacatcttttaaactctaatggaccctctcagacatcc 740

                                    
Query: 541 agagagagctcgccaaactccaaag 565
           |||||||||||||||||||||||||
Sbjct: 741 agagagagctcgccaaactccaaag 765


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 565
Length of database: 965
Length adjustment: 10
Effective length of query: 555
Effective length of database: 955
Effective search space:   530025
Effective search space used:   530025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)