Query= MSMg01no384_n13.b1 MSMg01no384_n13.b1 CHROMAT_FILE:
MSMg01no384_n13.b1 PHD_FILE: MSMg01no384_n13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:27:14 2005
(525 letters)
>mm_chr1_13407121_13408045
Length = 925
Score = 1015 bits (525), Expect = 0.0
Identities = 525/525 (100%)
Strand = Plus / Minus
Query: 1 atcgagaggaagcttatcagaggacagagacacacactcaagacctaaatgtgagcttct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 atcgagaggaagcttatcagaggacagagacacacactcaagacctaaatgtgagcttct 666
Query: 61 aaagagactttcaccgtggcctcttggctagtttcctgtatggacaaactaatagaagga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 aaagagactttcaccgtggcctcttggctagtttcctgtatggacaaactaatagaagga 606
Query: 121 cagttattcgtgaattaaggcagaaaattccaggaatgtgtgtagatttttaaattgtct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 cagttattcgtgaattaaggcagaaaattccaggaatgtgtgtagatttttaaattgtct 546
Query: 181 ttatactcctatgttgtcttcagggatttctgggtatggcaatggccatacctagatcca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 ttatactcctatgttgtcttcagggatttctgggtatggcaatggccatacctagatcca 486
Query: 241 gggaggtcctaatggaagaggacaatttttttcaggctcataattgagatgatgccctaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 gggaggtcctaatggaagaggacaatttttttcaggctcataattgagatgatgccctaa 426
Query: 301 gtgccattgtagtggactgcgctatcccagccagcctagaatgctcttgtttcactagtg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 gtgccattgtagtggactgcgctatcccagccagcctagaatgctcttgtttcactagtg 366
Query: 361 ttcaggtgtcacatcaagtcctgccatcatgaagctctgggcttgcagtagcctttcacc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ttcaggtgtcacatcaagtcctgccatcatgaagctctgggcttgcagtagcctttcacc 306
Query: 421 aatgtgtggtttgcctctttccctatgcctatagtactgggtgctatatcacagtctagg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 aatgtgtggtttgcctctttccctatgcctatagtactgggtgctatatcacagtctagg 246
Query: 481 ttcttgataagtagtgcaaaagatatacaaaattaggaattctgg 525
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ttcttgataagtagtgcaaaagatatacaaaattaggaattctgg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 525
Length of database: 925
Length adjustment: 10
Effective length of query: 515
Effective length of database: 915
Effective search space: 471225
Effective search space used: 471225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no384_n13.g1 MSMg01no384_n13.g1 CHROMAT_FILE:
MSMg01no384_n13.g1 PHD_FILE: MSMg01no384_n13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:27:14 2005
(546 letters)
>mm_chr1_13265419_13266364
Length = 946
Score = 980 bits (507), Expect = 0.0
Identities = 540/558 (96%), Gaps = 12/558 (2%)
Strand = Plus / Plus
Query: 1 ttcccaagttgtatgaacaatcgctcaaactcaaaaacatcccttataggtgaagaaaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 ttcccaagttgtatgaacaatcgctcaaactcaaaaacatcccttataggtgaagaaaat 248
Query: 61 ggggcagaatcagttttacaaaataaattgcttgtgggttgttacaaattgggcatctgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 ggggcagaatcagttttacaaaataaattgcttgtgggttgttacaaattgggcatctgt 308
Query: 121 ctgagctaaatgacttttccagaaaaacagtgatgttggaaaactctgtgccctggtgac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 ctgagctaaatgacttttccagaaaaacagtgatgttggaaaactctgtgccctggtgac 368
Query: 181 tggtgcacatgagtgggacgaacaataagatgaacaccaattaggaaatcagacatgcat 240
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct: 369 tggtgcacatgagtgggacgaacagtaagatgaacaccaattaggaaatcagacatgcgt 428
Query: 241 gcagcatccacactgcaggccgcgcggtaggaatgtccttccagctaatggttctgcaca 300
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 429 gcagcatccacactgcaggccgcgcggtaggaatgtccttccagctagtggttctgcaca 488
Query: 301 gacagctacccaaccctaaacaatgcttcctcatccgca------tccgcatc------c 348
||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct: 489 gacagctacccaaccctaaacaatgcttcctcatccgcacccacatccgcatctgcatcc 548
Query: 349 acatctgcacagagtggcttctcattgtccaaaggcagggagggcagcatgatcttgtgg 408
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 549 acatctgcacagagtggcttctcattgtccaaaggcagggaaggcagcatgatcttgtgg 608
Query: 409 aaaggcagccacccatgatgaaagcaggtggcctatgtgcaggtatcctggccctggaaa 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 aaaggcagccacccatgatgaaagcaggtggcctatgtgcaggtatcctggccctggaaa 668
Query: 469 cttccaagaaagatgctttcttgtgtcatcttgcgtcagcccttnaaacttgggaaaagt 528
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 669 cttccaagaaagatgctttcttgtgtcatcttgcgtcagcccttaaaacttgggaaaagt 728
Query: 529 aacttaaaaaccccgggt 546
|||||| |||||||||||
Sbjct: 729 aacttagaaaccccgggt 746
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 546
Length of database: 946
Length adjustment: 10
Effective length of query: 536
Effective length of database: 936
Effective search space: 501696
Effective search space used: 501696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
