Query= MSMg01no385_b22.b1 MSMg01no385_b22.b1 CHROMAT_FILE:
MSMg01no385_b22.b1 PHD_FILE: MSMg01no385_b22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:27:36 2005
(611 letters)
>mm_chr1_62556111_62557120
Length = 1010
Score = 1131 bits (585), Expect = 0.0
Identities = 600/605 (99%), Gaps = 1/605 (0%)
Strand = Plus / Minus
Query: 4 ggaattctttttcctcggccttccaaattcttagattacaggtgtgagttaaagattgct 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 807 ggaattctttttcctcggccttccaaattcttagattacaggtgtgagttaaagattgct 748
Query: 64 tagacaaaccaatggttttaacttaaaaacatgcatacagtaacttaaaaagagatggaa 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 tagacaaaccaatggttttaacttaaaaacatgcatacagtaacttaaaaagagatggaa 688
Query: 124 atatcaatataaaaagagcagctctgctcacagaaaactggaaataggtagaccagtagt 183
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 687 atatcagtataaaaagagcagctctgctcacagaaaactagaaataggtagaccagtagt 628
Query: 184 ctgaccatggagtcatggacaaacctgagattttcttgtggttcctaatatttggaactc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 ctgaccatggagtcatggacaaacctgagattttcttgtggttcctaatatttggaactc 568
Query: 244 actttgacaacaaactctgacatggattgacctataaagacaaagctgagtaccgtttac 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 actttgacaacaaactctgacatggattgacctataaagacaaagctgagtaccgtttac 508
Query: 304 agtgtttgaattaaaggaggtgaacgaggacacaattcgaagcttgtcaaatgtcagact 363
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 ggtgtttgaattaaaggaggtgaacgaggacacaattcgaagcttgtcaaatgtcagact 448
Query: 364 acaaggatcaattctccctcctgatggctgatacacatcggtcctgggattgaaaagtcg 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 acaaggatcaattctccctcctgatggctgatacacatcggtcctgggattgaaaagtcg 388
Query: 424 caacagactgtttgaaagaattctttcatggctacctgtctatcataggccatggttcaa 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 caacagactgtttgaaagaattctttcatggctacctgtctatcataggccatggttcaa 328
Query: 484 tttcagagttttctgttgccctgctataaactatatacaacttttcataatgtcagctgt 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 tttcagagttttctgttgccctgctataaactatatacaacttttcataatgtcagctgt 268
Query: 544 aaactcaaattatatttttttccttacccccataccacacaaaggctcctataaataaac 603
|||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct: 267 aaactcaaattatatttttttcctta-ccccataccacacaaaggctcctataagtaaac 209
Query: 604 tccta 608
|||||
Sbjct: 208 tccta 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 611
Length of database: 1010
Length adjustment: 10
Effective length of query: 601
Effective length of database: 1000
Effective search space: 601000
Effective search space used: 601000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no385_b22.g1 MSMg01no385_b22.g1 CHROMAT_FILE:
MSMg01no385_b22.g1 PHD_FILE: MSMg01no385_b22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:27:36 2005
(603 letters)
>mm_chr1_62405529_62406532
Length = 1004
Score = 1102 bits (570), Expect = 0.0
Identities = 594/602 (98%), Gaps = 1/602 (0%)
Strand = Plus / Plus
Query: 3 aaatactgggttgcctgataaatatcattctaggaccttggttggaaagaactgaagtgg 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 aaatactgggttgcctgataaatatcattctaggaccttggttggaaagaactgaagtgg 262
Query: 63 ataagtcaagtgtgtcactgttctcttcaaagcccagagtctgcagtctttcttcaaaga 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ataagtcaagtgtgtcactgttctcttcaaagcccagagtctgcagtctttcttcaaaga 322
Query: 123 gtgcagggcatgaagagtctgttattgaaaagctatattatctattgagcccctttcaga 182
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 323 gtgcagggcatgaagagtctgttattgaaaagctatattatctactgagcccctttcaga 382
Query: 183 atccctgaatctatgaacttattagactacttgtggcatacctggtgaacacacgaaata 242
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 383 atccccgaatctatgaacttattagactacttgtggcatacctggtgaacacacgaagta 442
Query: 243 ggtgaacgtctagatgtctaacctcagacgtttccactgccagagtcatgcctacggtta 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 443 ggtgaacgtctagatgtctaacctcagacgtttccactgccagagtcatgcctacagtta 502
Query: 303 tccacttgcatcaactgtatcaaataccctatggccatctatggcttggccattagccag 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 tccacttgcatcaactgtatcaaataccctatggccatctatggcttggccattagccag 562
Query: 363 aagtgattaccagtgtgatagatctgtgggccaaaagagagaagggttagttggaaaaaa 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 aagtgattaccagtgtgatagatctgtgggccaaaagagagaagggttagttggaaaaaa 622
Query: 423 a-gaagctaaatttataggatgaaatgagcaggaactgagcaaagtcactgcctacatct 481
| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 623 aagaagctaaatttataggatgaaatgagcaggaactgaacaaagtcactgcctacatct 682
Query: 482 actaacatttaaattgccaaaattggggatattgattctcagtgtatcctttggtctaaa 541
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 attaacatttaaattgccaaaattggggatattgattctcagtgtatcctttggtctaaa 742
Query: 542 taatgatgaacaacttacctctgtttttaggattaaagattcctcatctaggaagctttt 601
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 743 taatgatgaacaacttacctctatttttaggattaaagattcctcatctaggaagctttt 802
Query: 602 ca 603
||
Sbjct: 803 ca 804
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 603
Length of database: 1004
Length adjustment: 10
Effective length of query: 593
Effective length of database: 994
Effective search space: 589442
Effective search space used: 589442
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
