BAC Information

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BAC

Clone NameMSMg01-385E16
Chromosome1 (Build37)
Map Location 65,787,591 - 65,970,622
singlet/doubletdoublet
Overlap genenone
Upstream gene9430067K14Rik, LOC667245, LOC100043141, 4921521F21Rik, LOC667276, Cryge, Crygd, Crygc, Crygb, LOC654356, Cryga, D630023F18Rik, Idh1, Pip5k3, Pthr2, LOC100042716, EG628894, LOC100043165, LOC383520, EG667775
Downstream geneCrygf, LOC667781, EG667786, Mtap2, C030018G13Rik, Rpe, 1110028C15Rik, Acadl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-385E16.T7 (MSMg01no385_e16.b1)MSMg01-385E16.TJ (MSMg01no385_e16.g1)
ACCAG488526AG488527
length756759
length of high quality
(start - end)		521 (34 - 554)417 (64 - 480)
definitionCHROMAT_FILE: MSMg01no385_e16.b1 PHD_FILE: MSMg01no385_e16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:27:49 2005CHROMAT_FILE: MSMg01no385_e16.g1 PHD_FILE: MSMg01no385_e16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:27:49 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,787,591 - 65,788,107)(65,970,206 - 65,970,622)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTATTC
TCATCTAGTAAGAGATTTAATCTCATCAATCACATTTGATAATGTGGTCA
TGGGCTCCCTTTCTTCCTATAATTTCTCCCATTTTTCGTTTCTTCCTGAT
GTGTGTTGATGGGAGTTAGCCTCACTATGCAAGTAATAAGACTCACAAAA
TTTTTTCCAGAACATCAATATTGGGGAGAAACATTTTGTAATCACAATAA
ATTAAGACAAAATAAGTCTACATTGAAATCCAATATGGACATAATAAAAA
TGGGACTAAAATGCAGATTTAAAAGCTGATATTTTCTCTTCTCATATCTT
AACTCATTCTAAAGAACTACCAAATTAGCTCTAGCCAAATAATCATTAGT
TCTCACATTCTAGATGAAAATTACTATGATATTCAATCTTAGTTACCCTG
TTGGATTACATCATTTAATCCAAGCAAAGTCTGTCTTAATTGAACCCTAC
CTCAAACTACTTAGAACATACAATCTTATAATTCCTTTCTATACCTACTC
ACTGAAGCCATACATGAGCACATACAGNATATATTTCCTATCATTACAAT
TAATTGATCAGCCCAACTATGTTCAATCATTTCTTTACATACATGCTTGG
TAAGTTTTACCTGCCAAGAATTGACCAATGGACTAATTTAAAAAAACCTT
GAAATTAACATATTTAAAAAAACTGTTTGGTGAATTTTCCTGGAAAAACC
TTGGGA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTAGGTACAAAATGTGAGTTGAAATAAGCATTTATTTA
AATCTAAGATTATTATTTTCTCTTTAAAACGTGTTAAACTTTTTATTAAC
ATCTTAAATATTTATTATGAAACAATTCAATGCCATCAAAATAAAATAAA
GTTAAAAAATGACTCTGAATAGGTTTGGTTGTTTTTATTTGTTACAGGAA
AATATTAGTCATTATATCTTCCATTACCAAGTAGTTCACTATTGTATTGA
CTAAAATAAATCAATTAAGGCCTAAAGAAATAAATATAAGCAAACAAATA
CTGCACAGAAGTCGTGACTCATGCCCTGCCTTCCACCTCTTCCTGCTGTT
GTCACTCATGTGCTGAGTGTCATCATCATCCTTTTAGCANAATATGCTAA
GAAAATCTAAGGCTATTGTGCCTGCAGGAAATGTTTGTAAAAGACTTTAT
AAATCAATACTAACTTAAATCAAGTTTCTCAAATGAACAACAATCGCAAT
AAACCAAAATTCATGGCTTTTTTTCCTAAGAAAAAAAAAAACCTAACGCA
AAAACCTTTGAATAAAGCTGACCCTCCCCTCTTTAAAAAAATAGAATTTC
ATTTATAATCCCCCGACACATATTTCTTATAAAAAGACAAAACTTCCTTA
AAAAATTTTTTTAAAAAAACCCCCAACGCCCGTACAAAAATTTTGTTATT
TTTTCCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no385_e16.b1 MSMg01no385_e16.b1 CHROMAT_FILE:
MSMg01no385_e16.b1 PHD_FILE: MSMg01no385_e16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:27:49 2005
         (521 letters)



>mm_chr1_65787387_65788307
          Length = 921

 Score = 1000 bits (517), Expect = 0.0
 Identities = 517/517 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttattctcatctagtaagagatttaatctcatcaatcacatttgataatgtgg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttattctcatctagtaagagatttaatctcatcaatcacatttgataatgtgg 264

                                                                       
Query: 65  tcatgggctccctttcttcctataatttctcccatttttcgtttcttcctgatgtgtgtt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tcatgggctccctttcttcctataatttctcccatttttcgtttcttcctgatgtgtgtt 324

                                                                       
Query: 125 gatgggagttagcctcactatgcaagtaataagactcacaaaattttttccagaacatca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gatgggagttagcctcactatgcaagtaataagactcacaaaattttttccagaacatca 384

                                                                       
Query: 185 atattggggagaaacattttgtaatcacaataaattaagacaaaataagtctacattgaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atattggggagaaacattttgtaatcacaataaattaagacaaaataagtctacattgaa 444

                                                                       
Query: 245 atccaatatggacataataaaaatgggactaaaatgcagatttaaaagctgatattttct 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 atccaatatggacataataaaaatgggactaaaatgcagatttaaaagctgatattttct 504

                                                                       
Query: 305 cttctcatatcttaactcattctaaagaactaccaaattagctctagccaaataatcatt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cttctcatatcttaactcattctaaagaactaccaaattagctctagccaaataatcatt 564

                                                                       
Query: 365 agttctcacattctagatgaaaattactatgatattcaatcttagttaccctgttggatt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 agttctcacattctagatgaaaattactatgatattcaatcttagttaccctgttggatt 624

                                                                       
Query: 425 acatcatttaatccaagcaaagtctgtcttaattgaaccctacctcaaactacttagaac 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 acatcatttaatccaagcaaagtctgtcttaattgaaccctacctcaaactacttagaac 684

                                                
Query: 485 atacaatcttataattcctttctatacctactcactg 521
           |||||||||||||||||||||||||||||||||||||
Sbjct: 685 atacaatcttataattcctttctatacctactcactg 721


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 521
Length of database: 921
Length adjustment: 10
Effective length of query: 511
Effective length of database: 911
Effective search space:   465521
Effective search space used:   465521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no385_e16.g1 MSMg01no385_e16.g1 CHROMAT_FILE:
MSMg01no385_e16.g1 PHD_FILE: MSMg01no385_e16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:27:49 2005
         (417 letters)



>mm_chr1_65970006_65970822
          Length = 817

 Score =  801 bits (414), Expect = 0.0
 Identities = 416/417 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   taggtacaaaatgtgagttgaaataagcatttatttaaatctaagattattattttctct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 taggtacaaaatgtgagttgaaataagcatttatttaaatctaagattattattttctct 558

                                                                       
Query: 61  ttaaaacgtgttaaactttttattaacatcttaaatatttattatgaaacaattcaatgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 ttaaaacgtgttaaactttttattaacatcttaaatatttattatgaaacaattcaatgc 498

                                                                       
Query: 121 catcaaaataaaataaagttaaaaaatgactctgaataggtttggttgtttttatttgtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 catcaaaataaaataaagttaaaaaatgactctgaataggtttggttgtttttatttgtt 438

                                                                       
Query: 181 acaggaaaatattagtcattatatcttccattaccaagtagttcactattgtattgacta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 acaggaaaatattagtcattatatcttccattaccaagtagttcactattgtattgacta 378

                                                                       
Query: 241 aaataaatcaattaaggcctaaagaaataaatataagcaaacaaatactgcacagaagtc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 aaataaatcaattaaggcctaaagaaataaatataagcaaacaaatactgcacagaagtc 318

                                                                       
Query: 301 gtgactcatgccctgccttccacctcttcctgctgttgtcactcatgtgctgagtgtcat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 gtgactcatgccctgccttccacctcttcctgctgttgtcactcatgtgctgagtgtcat 258

                                                                    
Query: 361 catcatccttttagcanaatatgctaagaaaatctaaggctattgtgcctgcaggaa 417
           |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 catcatccttttagcaaaatatgctaagaaaatctaaggctattgtgcctgcaggaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 417
Length of database: 817
Length adjustment: 9
Effective length of query: 408
Effective length of database: 808
Effective search space:   329664
Effective search space used:   329664
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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