Query= MSMg01no385_o02.b1 MSMg01no385_o02.b1 CHROMAT_FILE:
MSMg01no385_o02.b1 PHD_FILE: MSMg01no385_o02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:28:34 2005
(524 letters)
>mm_chr1_25162387_25163308
Length = 922
Score = 971 bits (502), Expect = 0.0
Identities = 518/524 (98%), Gaps = 2/524 (0%)
Strand = Plus / Plus
Query: 1 gaattcttgtgttctcccaagatcattttaagtcaagttttaaccttgtactaaattgtt 60
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaattcttgtgaactcccaagatcattttaagtcaagttttaaccttgtactaaattgtt 260
Query: 61 attatttttgtgggtatacatacatacacacacacatatatattctatgtgttttcttaa 120
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attatttttgtggatatacatacatacacacacacatatatattctatgtgttttcttaa 320
Query: 121 gtcttatgtctacagtctcatctgttgtttcattcttgaaaaaatggcacagatattttc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtcttatgtctacagtctcatctgttgtttcattcttgaaaaaatggcacagatattttc 380
Query: 181 aacataatattctattttatatttaatcattaatgaataaatgtcttagttttatcaaca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aacataatattctattttatatttaatcattaatgaataaatgtcttagttttatcaaca 440
Query: 241 ctatgcaattgacttaactaatacaagggatttcacatttaaaaaataattactggactt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctatgcaattgacttaactaatacaagggatttcacatttaaaaaataattactggactt 500
Query: 301 tctcctcatgaaataaaacaagcaaacaaaaaggaagttttgttgtctgctatgcaatgc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tctcctcatgaaataaaacaagcaaacaaaaaggaagttttgttgtctgctatgcaatgc 560
Query: 361 caggttcagagtacattctcagattccagccctgatacacctttactgggtttctgtagt 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 561 caggttcagagtacattctcagattccagccctgatacacctttactgggtttccgtagt 620
Query: 421 gctgggggatataccaactgctaactgaaattcctatgcttttgacctacaaattagctt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 621 gctgggggatataccaactgctaactgaaattcctatgcttttgacctacaaattag--t 678
Query: 481 ttttttaatgtccctctttggggcacacggaaacttctttagat 524
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 ttttttaatgtccctctttggggcacacggaaacttctttagat 722
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 524
Length of database: 922
Length adjustment: 10
Effective length of query: 514
Effective length of database: 912
Effective search space: 468768
Effective search space used: 468768
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no385_o02.g1 MSMg01no385_o02.g1 CHROMAT_FILE:
MSMg01no385_o02.g1 PHD_FILE: MSMg01no385_o02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:28:34 2005
(454 letters)
>mm_chr1_25340897_25341750
Length = 854
Score = 725 bits (375), Expect = 0.0
Identities = 378/379 (99%)
Strand = Plus / Minus
Query: 1 ccaaatggtaaatgatggcctagtgcaataaataatctgatcccaaatacattttgaata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 ccaaatggtaaatgatggcctagtgcaataaataatctgatcccaaatacattttgaata 320
Query: 61 tgtgattacaatgtattgtctgtgagttacctctatgctttagttaggaacatccagtcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 tgtgattacaatgtattgtctgtgagttacctctatgctttagttaggaacatccagtcc 260
Query: 121 gcatggccaaagggctcaaaacgatccaatgtctaaaagaaaagtaattataaatcttga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 gcatggccaaagggctcaaaacgatccaatgtctaaaagaaaagtaattataaatcttga 200
Query: 181 tttaaaaacacatagaaacaatttgcaaaacacaagaaaatcaagaacaaggaagactaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 tttaaaaacacatagaaacaatttgcaaaacacaagaaaatcaagaacaaggaagactaa 140
Query: 241 agcctgtatacttcattcctccttagaatagggaacaaaatacccacggaaggagttata 300
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139 agcctggatacttcattcctccttagaatagggaacaaaatacccacggaaggagttata 80
Query: 301 gagacaaagtttggagctgagatggaaggaaggaccatccagagactgccccacccggga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79 gagacaaagtttggagctgagatggaaggaaggaccatccagagactgccccacccggga 20
Query: 361 gtccatcccataatcagcc 379
|||||||||||||||||||
Sbjct: 19 gtccatcccataatcagcc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 454
Length of database: 854
Length adjustment: 10
Effective length of query: 444
Effective length of database: 844
Effective search space: 374736
Effective search space used: 374736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
