BAC Information

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BAC

Clone NameMSMg01-386G01
Chromosome1 (Build37)
Map Location 130,315,807 - 130,512,844
singlet/doubletdoublet
Overlap geneLOC620659, Cxcr4
Upstream geneMgat5, Tmem163, Acmsd, Ccnt2, Ysk4, Rab3gap1, Zranb3, LOC666778, LOC100042670, EG666784, R3hdm1, LOC667109, LOC100042111, Ubxd2, Lct, Mcm6, Dars
Downstream geneLOC100042732, Thsd7b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-386G01.T7 (MSMg01no386_g01.b1)MSMg01-386G01.TJ (MSMg01no386_g01.g1)
ACCAG489359AG489360
length741794
length of high quality
(start - end)		657 (69 - 725)265 (74 - 338)
definitionCHROMAT_FILE: MSMg01no386_g01.b1 PHD_FILE: MSMg01no386_g01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:29:10 2005CHROMAT_FILE: MSMg01no386_g01.g1 PHD_FILE: MSMg01no386_g01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:29:11 2005
singlet/doubletdoubletdoublet
BLAST hitpluralunique
Map location.(130,315,807 - 130,316,463)(130,512,580 - 130,512,844)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAATGGCCTGCCAACAGTGACCCTTTTCTCCTTGGAGCAGTGACCC
CTTCCTGCTTCTTCCATTTCCTGTGCACCGGTTCTTTGCAGACTAGCCAA
CTGAATAAGACTGTGAGGTCGGACCCCAGCCAATGGGGAAAAGACACAGC
TGAGGTAAAATAAAAACCAAATGTACTTCCTGTGTTGGGATGTTTGCTCT
TCAGAGGATACCCTTTGATCAAGAGTCAAGTTTGCCTTGTCCAGATACTT
CGGTTGGACTGGTCATGTCTTTCTCTGTGTTCCTGAACTTATTTCTAACA
ATATGTGCTCTTGCTTTCTCACCTAACAGAAGAAAAGCATTTGCTAGCTA
CATCAATGGCCACACGCTATACTCCTGAGGTCTCCCAAGTGTCAGTAGTT
GGGGTTTCTCAGCAGAAGAGCATCTTGGCAGATTGGGGCCAAGGAATGCC
ATAAAGTCACACATGCAACAGACCTCACTCAAGAGATTTAGTGGGGCTTG
GGGGAGGGTATACAAAGACAGCCTTTGAGCAAGGATGGAGGAGAAAGAGA
ACAAGTTGTGAAGACACAGGCTTTATAAAGGGGTATAGTAAATGTGCACA
GGGAGAATACGCCACCTACGATGATTGGAAATGGGCTGCATTTGGTGACT
GGTGAGATGACATGGCTGCTGTCTCTTGAGTTACTGAAGGC

ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCATAAGGATGAAGATGAAGACAAGAAC
CCGCCTTACTCCACTGCCATTACCTGTTATTGGCCTCAACTGGTAGCAAT
TGCTTGGGGTCCCTCCCTGCCCCTTCAGACTACTTAAAATGTTAATTTTT
GTTCCTTGGTATCAAACCCAGGGTCTTATCAGGAACAGTAGACATGCATA
ACCACTGAGCTACATTGCAGTGCTCATGTGATTACATGTGTGTGTATATG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGNNNNNNNNNNNN
NTTTTTTTTTTTTTTTTTTTTTTNTNTNNNTTTTNNTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTNTCCCNNTTNTTNTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTNNNTTTTTTTTCTTTTTTTNTTTNTTTTTTTTTTTTTTTTNN
NNNTNTTTTTTTTTTTTTTTTTTTTTTTTGTTTNNTTNNTNTTTTTTTTT
GGTTTTTTTTTTTTTTTTTTNNTTTTTTTTTTTTTTTTTTTTTNNTTTTT
TTTTTTTTTTTTTTTTTTTTGTTTTTTTTTTTTTCTTTGTGTGGTTTTTT
TTTTGNTTCCTTTTTTTTTTCTTTTCCTTTTTCTTTTCTTGTCTTTCTTT
CTTTTTTTCTTCTCTCTTCTTCCCTTTCTTGCCTTTGCTTCCCTTTTTTT
TCTCCTTTTTCCCCCTCCCCCCCTTTTTCTCTCCCCCTCTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no386_g01.b1 MSMg01no386_g01.b1 CHROMAT_FILE:
MSMg01no386_g01.b1 PHD_FILE: MSMg01no386_g01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:29:10 2005
         (657 letters)



>mm_chr1_130315607_130316663
          Length = 1057

 Score = 1232 bits (637), Expect = 0.0
 Identities = 652/657 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagtgacccttttctccttggagcagtgaccccttcctgcttcttccatttcctgtgcac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagtgacccttttctccttggagcagtgaccccttcctgcttcttccatttcctgtgcac 260

                                                                       
Query: 61  cggttctttgcagactagccaactgaataagactgtgaggtcggaccccagccaatgggg 120
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagttctttgcagactagccaactgaataagactgtgaggtcggaccccagccaatgggg 320

                                                                       
Query: 121 aaaagacacagctgaggtaaaataaaaaccaaatgtacttcctgtgttgggatgtttgct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaaagacacagctgaggtaaaataaaaaccaaatgtacttcctgtgttgggatgtttgct 380

                                                                       
Query: 181 cttcagaggataccctttgatcaagagtcaagtttgccttgtccagatacttcggttgga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttcagaggataccctttgatcaagagtcaagtttgccttgtccagatacttcggttgga 440

                                                                       
Query: 241 ctggtcatgtctttctctgtgttcctgaacttatttctaacaatatgtgctcttgctttc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctggtcatgtctttctctgtgttcctgaacttatttctaacaatatgtgctcttgctttc 500

                                                                       
Query: 301 tcacctaacagaagaaaagcatttgctagctacatcaatggccacacgctatactcctga 360
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 501 tcacctaacagaagaaaagcatttgctagctacatcaatggacacacgctatactcctga 560

                                                                       
Query: 361 ggtctcccaagtgtcagtagttggggtttctcagcagaagagcatcttggcagattgggg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggtctcccaagtgtcagtagttggggtttctcagcagaagagcatcttggcagattgggg 620

                                                                       
Query: 421 ccaaggaatgccataaagtcacacatgcaacagacctcactcaagagatttagtggggct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ccaaggaatgccataaagtcacacatgcaacagacctcactcaagagatttagtggggct 680

                                                                       
Query: 481 tgggggagggtatacaaagacagcctttgagcaaggatggaggagaaagagaacaagttg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgggggagggtatacaaagacagcctttgagcaaggatggaggagaaagagaacaagttg 740

                                                                       
Query: 541 tgaagacacaggctttataaaggggtatagtaaatgtgcacagggagaatacgccaccta 600
           |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct: 741 tgaagacacaggctttataaagggatacagtaaatgtgcacagggagaatacgccaccta 800

                                                                    
Query: 601 cgatgattggaaatgggctgcatttggtgactggtgagatgacatggctgctgtctc 657
           ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 801 cgatgattggaaatgggctgcatttggtgactggtgagatgacgtggctgctgtctc 857


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1057
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1047
Effective search space:   677409
Effective search space used:   677409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no386_g01.g1 MSMg01no386_g01.g1 CHROMAT_FILE:
MSMg01no386_g01.g1 PHD_FILE: MSMg01no386_g01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:29:11 2005
         (265 letters)



>mm_chr1_130512432_130513096
          Length = 665

 Score =  513 bits (265), Expect = e-150
 Identities = 265/265 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   cataaggatgaagatgaagacaagaacccgccttactccactgccattacctgttattgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 cataaggatgaagatgaagacaagaacccgccttactccactgccattacctgttattgg 354

                                                                       
Query: 61  cctcaactggtagcaattgcttggggtccctccctgccccttcagactacttaaaatgtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 cctcaactggtagcaattgcttggggtccctccctgccccttcagactacttaaaatgtt 294

                                                                       
Query: 121 aatttttgttccttggtatcaaacccagggtcttatcaggaacagtagacatgcataacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 aatttttgttccttggtatcaaacccagggtcttatcaggaacagtagacatgcataacc 234

                                                                       
Query: 181 actgagctacattgcagtgctcatgtgattacatgtgtgtgtatatgtgtgtgtgtgtgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 233 actgagctacattgcagtgctcatgtgattacatgtgtgtgtatatgtgtgtgtgtgtgt 174

                                    
Query: 241 gtgtgtgtgtgtgtgtgtgtgtgtg 265
           |||||||||||||||||||||||||
Sbjct: 173 gtgtgtgtgtgtgtgtgtgtgtgtg 149


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 47
Number of extensions: 18
Number of successful extensions: 18
Number of sequences better than 10.0: 1
Number of HSP's gapped: 16
Number of HSP's successfully gapped: 1
Length of query: 265
Length of database: 665
Length adjustment: 9
Effective length of query: 256
Effective length of database: 656
Effective search space:   167936
Effective search space used:   167936
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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