Query= MSMg01no386_m01.b1 MSMg01no386_m01.b1 CHROMAT_FILE:
MSMg01no386_m01.b1 PHD_FILE: MSMg01no386_m01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:29:37 2005
(474 letters)
>mm_chr1_167658410_167659283
Length = 874
Score = 673 bits (348), Expect = 0.0
Identities = 373/384 (97%), Gaps = 5/384 (1%)
Strand = Plus / Plus
Query: 1 agagaatgctggaagttccaaatagatgaacgaatcccggagcctgctatcagatgccag 60
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 agagaatgctggaagttccaaatagatgaacgaatcccggagcctgctagcagatgccag 260
Query: 61 gccaggtggaaagtgaagaggcccaatattgggatacctagaagactatttgccttgttt 120
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 261 gccaggtggaaagtgaagaggcccaatattgggatacctagaagactatttgtcttgttg 320
Query: 121 tctatgtttttgttagtgtatactaattatacatcacagtaggtttcactgtggcattct 180
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctatgtttttgttagggtatactaattatacatcacagtaggtttcactgtggcattct 380
Query: 181 cacacccatatataactttgatcatattcactttccattccttcttatttatttatattt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cacacccatatataactttgatcatattcactttccattccttcttatttatttatattt 440
Query: 241 atttattt-----ttttttcaagacagggtttctcagtgtagatctagttattctagaac 295
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atttatttatcggttttttcaagacagggtttctcagtgtagatctagttattctagaac 500
Query: 296 ttaatagaacgggctagccttgaactcacagagatctgcctgcctctgccgcctccccaa 355
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct: 501 ttaatagaacgggctagccttgaactcacagagatccgcctgcctctgccgcctccccca 560
Query: 356 tcaccacccaccccattgctctct 379
||||||||||||||||||||||||
Sbjct: 561 tcaccacccaccccattgctctct 584
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 874
Length adjustment: 10
Effective length of query: 464
Effective length of database: 864
Effective search space: 400896
Effective search space used: 400896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no386_m01.g1 MSMg01no386_m01.g1 CHROMAT_FILE:
MSMg01no386_m01.g1 PHD_FILE: MSMg01no386_m01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:29:37 2005
(222 letters)
>mm_chr1_167856526_167857142
Length = 617
Score = 354 bits (183), Expect = e-102
Identities = 210/221 (95%), Gaps = 11/221 (4%)
Strand = Plus / Minus
Query: 1 agtataaggaaaaatgtatttccaagttggaaagaaagtgttatggaagacatcattaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 agtataaggaaaaatgtatttccaagttggaaagaaagtgttatggaagacatcattaga 353
Query: 61 ggaggtagagtttatgctgcccattgaagaatgggttacagttaaacataatggtggttg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 ggaggtagagtttatgctgcccattgaagaatgggttacagttaaacataatggtggttg 293
Query: 121 gcattttaccctcagcatgaagaagcaataaaagctaagatcgaagnnnttaaagaaaga 180
||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct: 292 gcattttaccctcagcatgaagaagcaataaaagctaagat-gaag---ttaaagaaaga 237
Query: 181 tngntcaccaag--tctctctct-tctctctct-tctctct 217
| | | |||||| ||||||||| ||||||||| |||||||
Sbjct: 236 t-g-t-accaagtctctctctctctctctctctctctctct 199
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 222
Length of database: 617
Length adjustment: 9
Effective length of query: 213
Effective length of database: 608
Effective search space: 129504
Effective search space used: 129504
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
