BAC Information

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BAC

Clone NameMSMg01-386N22
Chromosome1 (Build37)
Map Location 168,594,694 - 168,789,319
singlet/doubletdoublet
Overlap gene4831428F09Rik, LOC240895
Upstream geneRcsd1, Creg1, Cd247, Pou2f1, LOC665409, Dusp27, Gpa33, Mael, LOC100039795, Tada1l, Pogk, LOC100040287, EG226601, EG226604
Downstream geneLOC622102, C030014K22Rik, Uck2, LOC100039844, Tmco1, Aldh9a1, Mgst3, Lrrc52, Rxrg, Lmx1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-386N22.T7 (MSMg01no386_n22.b1)MSMg01-386N22.TJ (MSMg01no386_n22.g1)
ACCAG489737AG489738
length758754
length of high quality
(start - end)		586 (77 - 662)671 (67 - 737)
definitionCHROMAT_FILE: MSMg01no386_n22.b1 PHD_FILE: MSMg01no386_n22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:29:46 2005CHROMAT_FILE: MSMg01no386_n22.g1 PHD_FILE: MSMg01no386_n22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:29:46 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(168,788,734 - 168,789,319)(168,594,694 - 168,595,364)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAGCTCCGCGG
AATTCCTTTCAACTTTCCTCAACTCTGAGCCTTATTTCCTTATCATCAGA
GGGTTATTACCTCCACTTCTAAGTGGTGTGAGGATTAAATAAGATAATGA
TGAGAAAGAGCCCGAAGACCAGTAAGTACTCCACTGACATTAGTTATCCT
TCTTAGATAAAATCCTCCTAATGTAATAGGCAGTAAGTGGGAACTGGTTT
AAAGAGGGAGAATCAATGAGCAAATGCCCCTCACAGAAGGGAGAGCAGTC
TAGTGCGCGTGCGCAGAAGGGTGTTGTTGTTCAGCTGGAGTGAAACACAC
AGGGCACAAAGTTCTTGTATGGAGCAGTCACTAATCTATGGGAGAAATAG
CCTTTCCTCCCTCCTTCCTTTTTTTCCTTCCTTCCTTCCTCCTTCCGTCC
CTCCCTCCTTCCCTTCCTTCCGAGAAGCAGATAGCTTGTCCATTTCTGTT
TGTAGAAGCGGGAAGGAAGCTTGTTTCATATTAACACTCAGATTGCCTAA
AAATACTTTTACCTTTATGACACAAAGGCAAAGGAATATTGCAAATGGTA
GATGCTCTCTTACCTTAATATGTCTGGGTGGACGAGGACTCAGGTTCTAG
ACTTACTCTGTAGTTCTGCGGTAGCCCTAGTAACTGCCTGGCAGGCGAGA
ATGCCAGACTGGTTGTTGTGAGAACTCAAGCCAGAAAAGCAGGAGTAGTC
ACAGGTGA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCACAGTAAGAATCTTGCCACTCCATTTTATTTAC
CGTTTCTCCATAGCCTTTTTCCTTTGGTCCATGTCTGCCTTCATGGCCTT
CACTGAGGGTAATTTGCTCAGCCCTGGAAGAGAAAAATGCATTGGGATTT
GAAAGATTAAGAAGGGTGTGTGTAACTCAAAGACATGTTCAACATCCTTA
GGTACCAGAGAAATGCAACATGCTATAGCTCAGAAGAACATCCATCCATT
GCTGATGGGAATACAGACTTGTAGAGCCAGTATGGAAATCAGTGTGGTGG
TTCCTCAGAAAAATGGGAACCAATCTACCTCAAGCTCCAAGCTATAGCAC
TCTTGGTATATCTCCAAAGGAGGTTTTATCTTACCACAGACACTTGCTCA
GCCATGTTCACTGCAGCCTATTTATACCAGTCAGAAGCTGGAAACAACCT
ATATTTTCCTCAAAAGAATAATGAATAAAGAAAATAGAGTACATTTTCCC
AATGAAGTATTACTCAGCCATTAAAAGTTGAAATCATGGATTTTGCAGGT
AAATGGACAAAACTAAGAACAAAATTTATCCCGAGTGAGGTAACTCAGAT
CCAGAAAGACAAATATGTTATATATTCACTTATGTGTGGATATTAGCTGT
TAACATAATGATAATCTATAGAACCACAGAGGTTAAGTATAGAGTATGAG
ACTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no386_n22.b1 MSMg01no386_n22.b1 CHROMAT_FILE:
MSMg01no386_n22.b1 PHD_FILE: MSMg01no386_n22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:29:46 2005
         (586 letters)



>mm_chr1_168788723_168789708
          Length = 986

 Score = 1071 bits (554), Expect = 0.0
 Identities = 578/586 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gagccttatttccttatcatcagagggttattacctccacttctaagtggtgtgaggatt 60
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 gagcgttatttccttatcatcagagggttattacctccacttctaagtggtgtgaggatt 538

                                                                       
Query: 61  aaataagataatgatgagaaagagcccgaagaccagtaagtactccactgacattagtta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 aaataagataatgatgagaaagagcccgaagaccagtaagtactccactgacattagtta 478

                                                                       
Query: 121 tccttcttagataaaatcctcctaatgtaataggcagtaagtgggaactggtttaaagag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 tccttcttagataaaatcctcctaatgtaataggcagtaagtgggaactggtttaaagag 418

                                                                       
Query: 181 ggagaatcaatgagcaaatgcccctcacagaagggagagcagtctagtgcgcgtgcgcag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 ggagaatcaatgagcaaatgcccctcacagaagggagagcagtctagtgcgcgtgcgcag 358

                                                                       
Query: 241 aagggtgttgttgttcagctggagtgaaacacacagggcacaaagttcttgtatggagca 300
           |||||||  | ||  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 aagggtgcgggtgcacagctggagtgaaacacacagggcacaaagttcttgtatggagca 298

                                                                       
Query: 301 gtcactaatctatgggagaaatagcctttcctccctccttcctttttttccttccttcct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 gtcactaatctatgggagaaatagcctttcctccctccttcctttttttccttccttcct 238

                                                                       
Query: 361 tcctccttccgtccctccctccttcccttccttccgagaagcagatagcttgtccatttc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 237 tcctccttccgtccctccctccttcccttccttccgagaagcagatagcttgtccatttc 178

                                                                       
Query: 421 tgtttgtagaagcgggaaggaagcttgtttcatattaacactcagattgcctaaaaatac 480
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 177 tgtttgtagaagcgggaaggaagcttgtttcacattaacactcagattgcctaaaaatac 118

                                                                       
Query: 481 ttttacctttatgacacaaaggcaaaggaatattgcaaatggtagatgctctcttacctt 540
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 117 ttttacctttatgacacaaaggcaaaggaatattgcaaatggtagatgctctctaacctt 58

                                                         
Query: 541 aatatgtctgggtggacgaggactcaggttctagacttactctgta 586
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57  aatatgtctgggtggacgaggactcaggttctagacttactctgta 12


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 586
Length of database: 986
Length adjustment: 10
Effective length of query: 576
Effective length of database: 976
Effective search space:   562176
Effective search space used:   562176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no386_n22.g1 MSMg01no386_n22.g1 CHROMAT_FILE:
MSMg01no386_n22.g1 PHD_FILE: MSMg01no386_n22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:29:46 2005
         (671 letters)



>mm_chr1_168594494_168595564
          Length = 1071

 Score = 1290 bits (667), Expect = 0.0
 Identities = 670/671 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacagtaagaatcttgccactccattttatttaccgtttctccatagcctttttcctttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cacagtaagaatcttgccactccattttatttaccgtttctccatagcctttttcctttg 260

                                                                       
Query: 61  gtccatgtctgccttcatggccttcactgagggtaatttgctcagccctggaagagaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtccatgtctgccttcatggccttcactgagggtaatttgctcagccctggaagagaaaa 320

                                                                       
Query: 121 atgcattgggatttgaaagattaagaagggtgtgtgtaactcaaagacatgttcaacatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgcattgggatttgaaagattaagaagggtgtgtgtaactcaaagacatgttcaacatc 380

                                                                       
Query: 181 cttaggtaccagagaaatgcaacatgctatagctcagaagaacatccatccattgctgat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttaggtaccagagaaatgcaacatgctatagctcagaagaacatccatccattgctgat 440

                                                                       
Query: 241 gggaatacagacttgtagagccagtatggaaatcagtgtggtggttcctcagaaaaatgg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gggaatacagacttgtagagccagtatggaaatcagtgtggtggttcctcagaaaaatgg 500

                                                                       
Query: 301 gaaccaatctacctcaagctccaagctatagcactcttggtatatctccaaaggaggttt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaaccaatctacctcaagctccaagctatagcactcttggtatatctccaaaggaggttt 560

                                                                       
Query: 361 tatcttaccacagacacttgctcagccatgttcactgcagcctatttataccagtcagaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tatcttaccacagacacttgctcagccatgttcactgcagcctatttataccagtcagaa 620

                                                                       
Query: 421 gctggaaacaacctatattttcctcaaaagaataatgaataaagaaaatagagtacattt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gctggaaacaacctatattttcctcaaaagaataatgaataaagaaaatagagtacattt 680

                                                                       
Query: 481 tcccaatgaagtattactcagccattaaaagttgaaatcatggattttgcaggtaaatgg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tcccaatgaagtattactcagccattaaaagttgaaatcatggattttgcaggtaaatgg 740

                                                                       
Query: 541 acaaaactaagaacaaaatttatcccgagtgaggtaactcagatccagaaagacaaatat 600
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 741 acaaaactaagaacaaaatttatcccgagtgaggtaacacagatccagaaagacaaatat 800

                                                                       
Query: 601 gttatatattcacttatgtgtggatattagctgttaacataatgataatctatagaacca 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 gttatatattcacttatgtgtggatattagctgttaacataatgataatctatagaacca 860

                      
Query: 661 cagaggttaag 671
           |||||||||||
Sbjct: 861 cagaggttaag 871


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 671
Length of database: 1071
Length adjustment: 10
Effective length of query: 661
Effective length of database: 1061
Effective search space:   701321
Effective search space used:   701321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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