BAC Information

Click to search

BAC

Clone NameMSMg01-387B05
Chromosome1 (Build37)
Map Location 116,900,225 - 116,900,608
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC227506, Cntnap5a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-387B05.T7 (MSMg01no387_b05.b1)MSMg01-387B05.TJ (MSMg01no387_b05.g1)
ACCAG489895AG489896
length769755
length of high quality
(start - end)
454 (49 - 502)488 (83 - 570)
definitionCHROMAT_FILE: MSMg01no387_b05.b1 PHD_FILE: MSMg01no387_b05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:30:01 2005CHROMAT_FILE: MSMg01no387_b05.g1 PHD_FILE: MSMg01no387_b05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:30:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCATTTTATGTCCCAGACTTTATAATTCATGTTTTAGTACTCACA
GAACATCTTGCTATTGCTTAGCATGTATTTCACTTAAATGAATAGTTACC
ATGAAGGTAAACCTTTGATTTAGCTTACTCCATACCATGCTGACCCATAA
TTCCCACCATTTCTTCAAGTACAGCTTGTGTGTCCACATGGTAACTATGC
TGTAATCAGCCTAATGCACACATTTTTACTTTTAGAGTGCAATGTCCAGG
CACTGTATTATTTAATGTTTTAGTACTAATTTATATCTGTGTTTTTAATT
TTTTATCCACAATTATTGTGTTATAATTATTTGTTCCCCAATATTTCATA
ACATAATAACAGAATTATCCAGATATAGAAGACAATACATAAGGTTTCTT
TGGATTCTACATTTTTTATATCAAATCTTTTGACTTATTGTTTAATACCT
AAGACTCTGCAAGCATCGTCTTTTATAGAACATGGGAGAACATGTTCGAG
GCTATACTTAAGACTGAAGTGTGGAAACTATGCCCCTCCCTAAAATTGGG
ACAAAACCCCCCTGCAAGGAGTACCGAGACAAAATTGGGAGCTGAAACAA
AAGGAGGGGTCCCGTAAAAATGGCCTATCCCCGGAATCCCCCCCTAATCC
ATTTCCAAAGCCTCAAACCCTTGGCTCTCCTACCCAAATTTTTCCCACAG
GACCCCCAATACTTCGGCG
NNNNCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGGATACCGA
ATGGCAGAGAAGCACTTGAAAAAATGTTCAACATCCTTAATCATCAGGGA
AATGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGG
CTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCATGGATGTGGAGAA
AGAGGAACACTCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACT
CTGGATATCAGTCTGGCGGTTCCTCAGAAAACTGGACATAGTACTACCGG
AGGATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACT
GGTAAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAAT
AGCCAGAAGCTGGAAAGAACCTAGATGCCCCTCAACAGAGGAATGGATAC
AGAAAATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAG
AATGAATTTATGAAATTCCTAGGCAAATGGATGGACCTGGAGGGCATCAT
CCCGAGTGAGGAACACATTCTCAAAGGAACTCCCCAAAATGTACTCACCG
ATAAGGGGATATTACCCCCTCACCTAAGAAACCCCGATATTAGAAATATT
TTGTCACCCACTTGGAACTCAGTAAAAATGGAAACTGATATTGTGAACCT
ATGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no387_b05.b1 MSMg01no387_b05.b1 CHROMAT_FILE:
MSMg01no387_b05.b1 PHD_FILE: MSMg01no387_b05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:30:01 2005
         (454 letters)



>mm_chr1_116899956_116900808
          Length = 853

 Score =  714 bits (369), Expect = 0.0
 Identities = 381/385 (98%), Gaps = 1/385 (0%)
 Strand = Plus / Minus

                                                                       
Query: 70  ttagcatgtatttcacttaaatgaatagttaccatgaaggtaaacctttgatttagctta 129
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 ttagcatgtatttcactt-aatgaatagttaccatgaaggtaaacctttgatttagctta 595

                                                                       
Query: 130 ctccataccatgctgacccataattcccaccatttcttcaagtacagcttgtgtgtccac 189
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 ctccatatcatgctgacccataattcccaccatttcttcaagtacagcttgtgtgtccac 535

                                                                       
Query: 190 atggtaactatgctgtaatcagcctaatgcacacatttttacttttagagtgcaatgtcc 249
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 atggtaactatgctgtaatcagcctaatgcacacatttttacttttagagtgcaatgtcc 475

                                                                       
Query: 250 aggcactgtattatttaatgttttagtactaatttatatctgtgtttttaattttttatc 309
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 474 aggcactgtattatttaatgttttagtactaatttatatctgtgtttttaattttttatt 415

                                                                       
Query: 310 cacaattattgtgttataattatttgttccccaatatttcataacataataacagaatta 369
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 414 cacaattattgtgttataattatttgttccccaatattccataacataataacagaatta 355

                                                                       
Query: 370 tccagatatagaagacaatacataaggtttctttggattctacattttttatatcaaatc 429
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 tccagatatagaagacaatacataaggtttctttggattctacattttttatatcaaatc 295

                                    
Query: 430 ttttgacttattgtttaatacctaa 454
           |||||||||||||||||||||||||
Sbjct: 294 ttttgacttattgtttaatacctaa 270


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 454
Length of database: 853
Length adjustment: 10
Effective length of query: 444
Effective length of database: 843
Effective search space:   374292
Effective search space used:   374292
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)