Query= MSMg01no387_i23.b1 MSMg01no387_i23.b1 CHROMAT_FILE:
MSMg01no387_i23.b1 PHD_FILE: MSMg01no387_i23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:30:38 2005
(249 letters)
>mm_chr1_188957553_188958201
Length = 649
Score = 439 bits (227), Expect = e-128
Identities = 242/247 (97%)
Strand = Plus / Plus
Query: 3 ggaattctataaaactccgcagagggaggtgggaatccaagagttaatgctgaatttatt 62
||||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 203 ggaattctataaaacactgcagagggaggagggaatccaagagttaatgctgaatttatt 262
Query: 63 ctcctgttagttcagtcttccgtctctcagaagggaagggatgacacatagggtggcatt 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ctcctgttagttcagtcttccgtctctcagaagggaagggatgacacatagggtggcatt 322
Query: 123 ctggcagggactgctcagtggaacgcagagagaatggcctgactcatgggctttcttctt 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ctggcagggactgctcagtggaacgcagagagaatggcctgactcatgggctttcttctt 382
Query: 183 gaacctccagaggttggaggtcagtccatcatctgctgcagaatcttcttgaaagaataa 242
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 383 gaacctccagaggtcggaggtcagtccatcatctgctgcagaatcttcttgaaagactaa 442
Query: 243 atctgcc 249
|||||||
Sbjct: 443 atctgcc 449
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space: 153600
Effective search space used: 153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no387_i23.g1 MSMg01no387_i23.g1 CHROMAT_FILE:
MSMg01no387_i23.g1 PHD_FILE: MSMg01no387_i23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:30:39 2005
(399 letters)
>mm_chr1_189166619_189167416
Length = 798
Score = 723 bits (374), Expect = 0.0
Identities = 392/398 (98%), Gaps = 1/398 (0%)
Strand = Plus / Minus
Query: 1 tataggccagtatggcctggggaatttacagatataacagactgtattctgactaactct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 tataggccagtatggcctggggaatttacagatataacagactgtattctgactaactct 538
Query: 61 attctagaatttggaaacagtaattttcatggacaaggtgatgacccagcctaaccacat 120
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 537 attctagaatttggaaacagtgattttcatggacaaggtgatgacccagcctaaccacat 478
Query: 121 aatccgagtgtgtttctgtcatggcctttctgactgtatctagagaagccccttcactca 180
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct: 477 aatccgagtgtgtttctggcatggcctttctgactg-atctagagaagccccttcactca 419
Query: 181 ggctggatgttggatgctgttagctgaaatcaaggacgttcccagctgcctgcatttgtt 240
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 ggttggatgttggatgctgttagctgaaatcaaggacgttcccagctgcctgcatttgtt 359
Query: 241 ccccctttgaaaggactgctgctgcacacaggtttgaaaaatacacttaaaatgagtgac 300
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct: 358 ccccctttgaaaggactgctgttgcacacaggtttgaaaaatacatttaaaatgagtgac 299
Query: 301 ttagcattctgagtaaccaaacaaaaacaaaaacacacattaaataactatgaacttttt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 ttagcattctgagtaaccaaacaaaaacaaaaacacacattaaataactatgaacttttt 239
Query: 361 ttcataagctaaaatctagtagtaaaatgaaaatctca 398
||||||||||||||||||||||||||||||||||||||
Sbjct: 238 ttcataagctaaaatctagtagtaaaatgaaaatctca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 399
Length of database: 798
Length adjustment: 9
Effective length of query: 390
Effective length of database: 789
Effective search space: 307710
Effective search space used: 307710
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
