BAC Information

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BAC

Clone NameMSMg01-387J06
Chromosome1 (Build37)
Map Location 160,689,355 - 160,856,254
singlet/doubletdoublet
Overlap genePappa2
Upstream gene6430517E21Rik, Astn1
Downstream gene4930562F17Rik, EG240853, LOC664972, Rfwd2, EG620484, Tnr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-387J06.T7 (MSMg01no387_j06.b1)MSMg01-387J06.TJ (MSMg01no387_j06.g1)
ACCAG490278AG490279
length747792
length of high quality
(start - end)		488 (69 - 556)306 (83 - 388)
definitionCHROMAT_FILE: MSMg01no387_j06.b1 PHD_FILE: MSMg01no387_j06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:30:40 2005CHROMAT_FILE: MSMg01no387_j06.g1 PHD_FILE: MSMg01no387_j06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:30:40 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(160,689,355 - 160,689,842)(160,855,949 - 160,856,254)
sequence
TCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGAAACCTTAACATATTCTTGTTTTTTAACTTGTGAAATTCTGAC
TGCTGTGTTATTTTTCAAGAATAAATTATTCTTCTAAAGTACATTCAATT
AGTCTCTTACACCTTTCAAATTATCTGAGTTTGTCCCTTAGATTGCTGGA
TGAAACTGAATCACTTTATTTCATTTTCCATAGCAATATGACACACATTG
TGAGTGTTCTGCTAACTGTAGCTCTGCTCCAGAACACGGCAGCTGGACAC
ATAGCCCACAGTCATAAAGAATAATGAAGTGTGACTGCAGAGGATAAGTA
ATGGGCACAAGTAAGGTAAGTTTCCTTGCTTGACAACTGAATGAGAAAGT
TCCGTAGGGACCAATCAACTTAAACTCTATCCATATGGCTCTCCTTTGAT
TCTGAGATCATCCATAGAAATGGGTATGATCCTCATTTACTTGAAGAAGT
TGAAAGCCAGGACAGTGAACACCAGCTGTATATGAGGCTATACAGCTGGG
GACTAGCAGAATTCTGGAACGTACGTTTAGCTTTACAAGGACTGGATGGA
TAGCCTCAAAATTAAAAAATGTTCTGTTCTTATCGAGGAACAGAAATTAA
GGACGTAAAAGTGAACGCTCCAAAAAAACTTGAAACAATTGCAAAAACCC
CCCCTATAACGACCTTTTTTTTTGCCTCCCCCCCCCAAAAAAACATA

CTTTTCTCTATGATATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGGCTTTTATGTTCTTAC
TTTGATAACCCCTACATTTCATTTTGTGTTTAATCCAGGAGACCTGCAAT
TCTATAAAATTTAACTTTGGGGGCATCAGGAATTCCAGGTCCCTCAAGGA
AGTCAATAGGATTTTCTTTCTTATTTTTAAAAATTATTTTATTTTGAAGA
CAGTTTTTTTCCCCCAGCAGTTGGCCTTGAACTTGTTCTATAGCTCAGAA
TTTTCCCATCTTCTTTTACTTTCTGTAGTCTCTGGATATTTCTTTTAATT
TCTGTCTAGCTTGGAGATACAGTTAATATTTGTTTCTTCTGCTGCATTAT
TAATTGGCAGTTGTTCATTTCCCAGCACCATATTACTATGGTTTTGTAGT
AACCACCTCCCCATATTTAATCCTTTATATACGTCTTACCTTGTCATCAT
TTTTTGTTACTCCCTGTAACCCACTTTTTAGTGCCGGATGCCCACTGAAT
GTGTTGGCACTTCGGCTTGCACTTTTCGTTTCCCCCCTTTTCCCCTTACT
TTGTCTGACGCTCTCTTTTTGCTCCCCTTACCTCCTCCTTTTTCCCTCTT
CCCTCATTCTCCCATATCCAATCCCTCCCTATCAACCTATCTAGCAATTC
ACTTATCTTTCTTTCTACTCCTACTTCGCTATCACTTTTCTTCACGTATA
TCTTTTCACTTTTCCATCTTATTCTCTTCTTTACCCTCTCGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no387_j06.b1 MSMg01no387_j06.b1 CHROMAT_FILE:
MSMg01no387_j06.b1 PHD_FILE: MSMg01no387_j06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:30:40 2005
         (488 letters)



>mm_chr1_160689155_160690042
          Length = 888

 Score =  890 bits (460), Expect = 0.0
 Identities = 481/488 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tattcttgttttttaacttgtgaaattctgactgctgtgttatttttcaagaataaatta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tattcttgttttttaacttgtgaaattctgactgctgtgttatttttcaagaataaatta 260

                                                                       
Query: 61  ttcttctaaagtacattcaattagtctcttacacctttcaaattatctgagtttgtccct 120
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 261 ttcttctaaagtacattcaattagtctcttacacttttcaaattatctgagtttgtccct 320

                                                                       
Query: 121 tagattgctggatgaaactgaatcactttatttcattttccatagcaatatgacacacat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tagattgctggatgaaactgaatcactttatttcattttccatagcaatatgacacacat 380

                                                                       
Query: 181 tgtgagtgttctgctaactgtagctctgctccagaacacggcagctggacacatagccca 240
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtgagtgttctgctaactgtagctatgctccagaacacggcagctggacacatagccca 440

                                                                       
Query: 241 cagtcataaagaataatgaagtgtgactgcagaggataagtaatgggcacaagtaaggta 300
           || |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caatcataaagaacaatgaagtgtgactgcagaggataagtaatgggcacaagtaaggta 500

                                                                       
Query: 301 agtttccttgcttgacaactgaatgagaaagttccgtagggaccaatcaacttaaactct 360
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 501 agtttccttgcttgacaactgaatgagaaagttccctagggaccaatcaacttaaactct 560

                                                                       
Query: 361 atccatatggctctcctttgattctgagatcatccatagaaatgggtatgatcctcattt 420
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atccctatggctctcctttgattctgagatcatccatagaaatgggtatgatcctcattt 620

                                                                       
Query: 421 acttgaagaagttgaaagccaggacagtgaacaccagctgtatatgaggctatacagctg 480
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 acttgaagaaattgaaagccaggacagtgaacaccagctgtatatgaggctatacagctg 680

                   
Query: 481 gggactag 488
           ||||||||
Sbjct: 681 gggactag 688


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 888
Length adjustment: 10
Effective length of query: 478
Effective length of database: 878
Effective search space:   419684
Effective search space used:   419684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no387_j06.g1 MSMg01no387_j06.g1 CHROMAT_FILE:
MSMg01no387_j06.g1 PHD_FILE: MSMg01no387_j06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:30:40 2005
         (306 letters)



>mm_chr1_160855586_160856291
          Length = 706

 Score =  592 bits (306), Expect = e-173
 Identities = 306/306 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tggcttttatgttcttactttgataacccctacatttcattttgtgtttaatccaggaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 tggcttttatgttcttactttgataacccctacatttcattttgtgtttaatccaggaga 610

                                                                       
Query: 61  cctgcaattctataaaatttaactttgggggcatcaggaattccaggtccctcaaggaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 cctgcaattctataaaatttaactttgggggcatcaggaattccaggtccctcaaggaag 550

                                                                       
Query: 121 tcaataggattttctttcttatttttaaaaattattttattttgaagacagtttttttcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 tcaataggattttctttcttatttttaaaaattattttattttgaagacagtttttttcc 490

                                                                       
Query: 181 cccagcagttggccttgaacttgttctatagctcagaattttcccatcttcttttacttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 cccagcagttggccttgaacttgttctatagctcagaattttcccatcttcttttacttt 430

                                                                       
Query: 241 ctgtagtctctggatatttcttttaatttctgtctagcttggagatacagttaatatttg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 ctgtagtctctggatatttcttttaatttctgtctagcttggagatacagttaatatttg 370

                 
Query: 301 tttctt 306
           ||||||
Sbjct: 369 tttctt 364


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 306
Length of database: 706
Length adjustment: 9
Effective length of query: 297
Effective length of database: 697
Effective search space:   207009
Effective search space used:   207009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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