TACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTACTCCTATTTGCTTGTCCTTGTCCAAAATATACCATAAGCAATTATAT
ATCATGATCTTTTTAAAAATAAATTCTCATCTTCCTTCAGAGAAGGTAAA
GGTGTATTTGTTACAAATAACTTTGTTAATTATATGACTCATTAAAACTA
TTGTGAAGCCAATTCAAGCAACATTACTTATTTTTATTCACGTGAATTCA
GGTGACTCTGATTATATATTGCTGAAAATCATAAAGGAAAGGCCCTTTAC
CATAACCATTGGATAGAATAATTCATTTTACTATTTCTTCTTTGATCCTG
TAGGAAGTGTTTGTAATGATCTTGGTGTACCTACTAGAAGTCCACATAGC
TACTCACTGACACTATCATAAAAACTACAATAAAGTTTGAAGCACCCAAC
CAATTCTTACAGAAGTAATTTTAATATGTTATTTGTAAGCATTCTGAAAT
TGAAATCTGAGCACCATCTTAGCAGAAAGAGCCCCACGAGTAATTAACAC
TAAAATACCACCTTGGAATAATTTCAGGTGTCGACAACCTGGCAATTATC
CTGCAGGCCCTATGTCCCTGTCTCCACATGCCCCCACTGCCAAACGCACC
CGGCACACCATAACCCTCGGTCTCTTTATTTAATCCCTGCATGCTCTCCT
CCCCCCTTTTCTTCCCTCCTTCCCCCCACTCCCCTCTCGTCCTTCCCACT
TCGTCCCCCCTTTCCCCCC

NNCCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACAAAAAGGGATCTATCAT
GACTGCCCTCCGAAAGACCCAAAAAGCAGCTGAAAGAGTTAGATGCAGTT
ATTTGCACCCAAACAATGGACAGAAGCAGCTGATCCCTGTTGTTGAATTA
GGGAAGGCTGAGAGAAGCTGAGGAGAAGGGTGATTCTGTAGAAGGACCAG
CAGTCTTAATTATTCTGGACCTTGAGATCTTTCAAACACTGGACACCAAA
CAGGCAGCATACACCACCTGAAATGAGGCCCCCAACACACATACAGTAGA
GGACTTCTGAAGGGTCTGTATTCACTCAGAGATGAAGCACCTAACCCTCA
AGAGACTGGAAGCCCCAGAGAGTTTAGAGGTCAGGGGGTGGGTGCTGGGG
GCATCCACATGGAGATGGGGTGGGCTGGGGAGGAGGTGNNNNTNNNTNNN
NNNNNNNTNNNNNNNNNNNTNNNNNNNNNTTNNTTTTTTTTTTTTTTTTT
TTTTTTNTTTTTTGTTTTTTTNTNTTTTTTTNNTTTTTTTGTTTTTGGTT
TTTTTTTTTTTTTTTTTTGTTGTTGTTTTGGTTTTGTTTTTTTTTTTTTT
GTTGTTTGTTGGTTTTGTGTTTTTTNGGGGGGGTGTTGTTTGTTGTTTTT
GTTGGTTTGGTGTGGTGGTTTGTGTTGTGGTTTTGGTTTTNGTTTTTGTG
TTTGTTTGTGTGGTTT

Query= MSMg01no387_k14.b1 MSMg01no387_k14.b1 CHROMAT_FILE:
MSMg01no387_k14.b1 PHD_FILE: MSMg01no387_k14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:30:47 2005
         (466 letters)



>mm_chr1_144685148_144686011
          Length = 864

 Score =  762 bits (394), Expect = 0.0
 Identities = 446/464 (96%), Gaps = 2/464 (0%)
 Strand = Plus / Minus

                                                                       
Query: 3   gaattctactcctatttgcttgtccttgtccaaaatataccataagcaattatatatcat 62
           ||||||||||||||  || |||||||||   |||||||||||||||||||||||||||||
Sbjct: 664 gaattctactcctaaatgtttgtccttg--aaaaatataccataagcaattatatatcat 607

                                                                       
Query: 63  gatctttttaaaaataaattctcatcttccttcagagaaggtaaaggtgtatttgttaca 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 gatctttttaaaaataaattctcatcttccttcagagaaggtaaaggtgtatttgttaca 547

                                                                       
Query: 123 aataactttgttaattatatgactcattaaaactattgtgaagccaattcaagcaacatt 182
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 aataactttcttaattatatgactcattaaaactattgtgaagccaattcaagcaacatt 487

                                                                       
Query: 183 acttatttttattcacgtgaattcaggtgactctgattatatattgctgaaaatcataaa 242
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 486 acttatttttattcatgtgaattcaggtgactctgattatatattgctgaaaatcattaa 427

                                                                       
Query: 243 ggaaaggccctttaccataaccattggatagaataattcattttactatttcttctttga 302
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 ggaaaggccctttatcataaccattggatagaataattcattttactatttcttctttga 367

                                                                       
Query: 303 tcctgtaggaagtgtttgtaatgatcttggtgtacctactagaagtccacatagctactc 362
           ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 366 tcctgtaggaaatgtttgtaatgatcttgttgtacctactagaagtccacatagctactc 307

                                                                       
Query: 363 actgacactatcataaaaactacaataaagtttgaagcacccaaccaattcttacagaag 422
           ||||||| |||||||||||||| |||||||||||||||| | ||| ||||||||||||||
Sbjct: 306 actgacattatcataaaaactaaaataaagtttgaagcagcaaacaaattcttacagaag 247

                                                       
Query: 423 taattttaatatgttatttgtaagcattctgaaattgaaatctg 466
           ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 246 taattttaatatgttatttataagcattctgaaattgaaatctg 203


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 864
Length adjustment: 10
Effective length of query: 456
Effective length of database: 854
Effective search space:   389424
Effective search space used:   389424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)