BAC Information

Click to search

BAC

Clone NameMSMg01-387O06
Chromosome1 (Build37)
Map Location 139,288,690 - 139,289,066
singlet/doubletsinglet
Overlap genenone
Upstream gene9230116N13Rik, Ddx59, Kif14, Zfp281, LOC667686, EG623818, Nr5a2, Rnu7-ps3, LOC100042567
Downstream geneLOC100043143, Ptprc, LOC100042596, Atp6v1g3, LOC100042600
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-387O06.T7 (MSMg01no387_o06.b1)MSMg01-387O06.TJ (MSMg01no387_o06.g1)
ACCAG490517AG490518
length747783
length of high quality
(start - end)
271 (46 - 316)381 (85 - 465)
definitionCHROMAT_FILE: MSMg01no387_o06.b1 PHD_FILE: MSMg01no387_o06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:31:05 2005CHROMAT_FILE: MSMg01no387_o06.g1 PHD_FILE: MSMg01no387_o06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:31:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGCATCCGCGGAA
TTCTTTGTTTTTCCCTGTACCTCATTTTAAATAGGGTTATTTGATTCTCC
GGAGTCTTAACTTCTTGAGTTCTTTGTACATACTGAATATTAGCCCTCTA
TCGAATGTAGGATTGGTAAAGATCATTTTCCAACCTGTTGGTTGCTGTTT
TGCCCACTTGACAGTGTCCTTTGCCTTACAGAAGCTTTTCAGTTTTATGA
GGTCCCATTTCTTGATCCTTGATCTTAGAGCATAAGCCATTGGTGTTCTG
TTCAGGAAATGTTTCCCTGTGTTTTGTGTTTGAGGCTCTTCTCCACTTTC
TCTTCTATTAGTTTTAGTGTATCTGGTTTTATGTGGAAGTCATTGGTCCA
CCTGGACTTGAACCCCCCCCCCAGGAGATAAGAATGGCTTGATGTGCATT
GTTCTACAAGCTGACTACCACTTGAACCACTGTCCTTTGTTGAAAATGCT
GTCTCCTTCCCCCTGGATGGTCTCACCTATTTTTTCTAACACCACGTGAT
CTCCCCGTTGGGCCCTCTCCTCTTCCCCCCTCCCTTTCCCCTTCTTCTCC
CGCTTTCCTCCCCCTCAAGTCCTCCCCTTTTTTCCCCCTTTCCCCCCTAC
CCCTTTTCCCCTCTCCCTTCTCCCCTTTAACTCTTTTTTTTTCTCACCAT
CCTTCCCCCTCCCTCCTTTTTATCCCCCCCCCTTCCCTCTCCTCCCG
TTTTTTTTCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTCCCTGTGAATCAGT
GAGTTAGCATTCTGATGTCTGGCCTGTCTTGTATATGTTTCAGCATTTAT
GAATCAGGCTGTCATTGTCTGATTCTCTTTTAATACTGCAGGAACTTAAG
ACTAATGATAAGCTAATATGTGTCTTTAGAATGAGCGCTTCCTTTGTTGG
CCGAACATCTACCACCACATATCTATATATTATCTGCCTGTCTGTCTGTC
TGTCTATCCATCCATCTAGCTATTATCTATCTTAACTATTTATTTATATT
TTTATCTACCAATCATCTCTATCTGTGAAATGTGACCAACTAATTAAAAG
ATATTATAGATAAAATGTGCACTGTGGCATGAATGCTTCTGTATACACAC
ACACACACACACACACACACACACACACACTCTCATCCAGAGGAAAGTAG
TAGCAAAACACCCAATGTTGACGCCTTTGGCTTCCACCTGTATGCATATA
CATATGTTCCCTGCATACACACCTGCTTCCCTTGCCCCCTTTCTTTAGAA
ACACAATCCCCATTTTCCCTACCGAACATAACTGATCCCCTCATATTCTT
CCCCAACCATACCAAGTTTTCCCACCCCCTTCCTTCTTTTTCGTTCTCTC
TTCTTCCATCTCCTTAATCCCATCATCTCTTCCCACCCCTTTTTCTTTTT
TTTTTTCTTCTCCCCCTCTTCCCACCCCTTCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no387_o06.g1 MSMg01no387_o06.g1 CHROMAT_FILE:
MSMg01no387_o06.g1 PHD_FILE: MSMg01no387_o06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:31:05 2005
         (381 letters)



>mm_chr1_139288486_139289266
          Length = 781

 Score =  629 bits (325), Expect = 0.0
 Identities = 364/377 (96%)
 Strand = Plus / Plus

                                                                       
Query: 5   ctgtgaatcagtgagttagcattctgatgtctggcctgtcttgtatatgtttcagcattt 64
           ||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 205 ctgtgaatcggtgagttagcattctgatgtctggcctgccttgtatatgtttcagcattt 264

                                                                       
Query: 65  atgaatcaggctgtcattgtctgattctcttttaatactgcaggaacttaagactaatga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atgaatcaggctgtcattgtctgattctcttttaatactgcaggaacttaagactaatga 324

                                                                       
Query: 125 taagctaatatgtgtctttagaatgagcgcttcctttgttggccgaacatctaccaccac 184
           || ||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 325 taggctaacatgtgtctttagaatgagtgcttcctttgttggccgaacatctaccaccac 384

                                                                       
Query: 185 atatctatatattatctgcctgtctgtctgtctgtctatccatccatctagctattatct 244
           |||||||||||| ||||| ||||||||||||||||||||||| ||||||| |||| ||||
Sbjct: 385 atatctatatatcatctgtctgtctgtctgtctgtctatccacccatctatctatcatct 444

                                                                       
Query: 245 atcttaactatttatttatatttttatctaccaatcatctctatctgtgaaatgtgacca 304
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 445 atcttaactatttatttatatttttatctaccaatcatctctctctgtgaaatgtgacca 504

                                                                       
Query: 305 actaattaaaagatattatagataaaatgtgcactgtggcatgaatgcttctgtatacac 364
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 505 actaattaaaagatgttatagataaaatgtgcactgtggcatgaatgcttctgtacacac 564

                            
Query: 365 acacacacacacacaca 381
           |||||||||||||||||
Sbjct: 565 acacacacacacacaca 581


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 381
Length of database: 781
Length adjustment: 9
Effective length of query: 372
Effective length of database: 772
Effective search space:   287184
Effective search space used:   287184
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)