CTTTTCTCACTTTTATCCCCTCCACCTCTTCCAATTTTCCCGCCTATTTC
TTTTTCCCTCCCTTTATATTGCAACCTCCGCTTTTTCTGTTTTCGCGCTT
TTCCCCTTTTTCTCTTTTTCCTGCTTCAATATTTTACATGCGTAATCATA
CCTGTTCTAAAAATACCTGTTTCCCCCACTTACTTTCCACGAATTTACGC
TTTATATCCCTCCGCCTACGATCACCTTCAAAACGTNCCCACCTCTTTTA
AACAAAATTGTGGGGCCGGCCTAATAAGGAATTTCACTTATTTTTCCAAG
AAGGAAATCGGGGGGGAAATTCCTGGGCAAATTTTTCCCCCTAAAAAAAG
CTTAATTTTGGAAAAACGAAAAAAAAAATGGGAAGGTTTCCCTTTAAAAA
AACTGGGGCAAAGGACATATTTTTTTTTGGGGGCCACATTAGGGAAAAAA
AAAAAGGGGCCTTCCCCGGGGGGAAAAAAAGGGTTTGAAAAGGAAAGGGG
GGTTTTATACTGGGGGAGGAGAATTTGGGGGAGAAATTTTTTAAAAATAA
ACGCCAAAAATAAAAAAAAGTGGGGGTTTTTCGGGGGGGGAGGGGCCCAC
AATATGGGGGAGGGGGGGAAAAAAAAAAAATCCTTCGTGGGCGAATCCCC
CCCTCTCCAATCATACTTATTTTGGGCGCTATGTGCAGAAAAGGCGTTAT
TCTAATTATTTCCCTTACTCTTGTGGCGGTTATTTAATTCCCTTCCCCCA
AACTTAGTTGGGCGGTTAATTTTTTTCTTTCTCTTTGGCCACGTTTTACC
CTACACAATATTTAAGGGCGTTGGGAGCAGAAACAATTTCTTTACCGTGG
GAGGGGGGG

NNNNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTTTGTGAACCACTGCC
TTAACTATTAGAGATACCAAAAAGTCCCAAACTCAAAAGCTAACAAATGC
CCACATGGAACAGACAAGCCTGTCCTCTTTATTTCAGAGCCACTTGTTTG
CTCTAGCACTAATGCATCAGGAGGGAAAGGAATAGATAAAAACTGAATGT
TCTGACCCAACACTGAAGCACATCCTGAAAAACACTTTATAAATTATTGA
ACTTGCTCTTACCTTCAGATGAAGCCATTCAGATCAAGAAAGACATAGTA
ATTATGTGCTTCATTACAGGTGTGATTATCAAATATAAGCACACAAATTA
CAAATAGAAGATTTCACACAATATTTAAATTTTCAAAAAGCAAATAAAAT
ATGTGAATCAATTAATTACAAATTATAAAATAAATAAAAATTAAAATGTC
AACCAATGATACAAACTCCTTGAGACATTCAGCATTAGCAGTCTAGTACA
TTATTTTAAATGGCACACTATATTTCTGATGCACACTGACACGGGAAGTG
TTCTGTATTGATTACCACCGTTTTAAAGGACCCAGGGCAGAAAAACCTGT
TTTTAATTAAAAAAAAATTTGATTTTCCTCCTGTAAACAAAAAAGGGCCA
AACCTGAATAAGGGATTTCGCAACCTGGTTAAAAAAAAGGAGGGGTAAAA
ATTTTACGGTGGACAAACCCCGG

Query= MSMg01no387_o08.g1 MSMg01no387_o08.g1 CHROMAT_FILE:
MSMg01no387_o08.g1 PHD_FILE: MSMg01no387_o08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:31:05 2005
         (483 letters)



>mm_chr1_6740111_6740993
          Length = 883

 Score =  919 bits (475), Expect = 0.0
 Identities = 481/483 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   actttgtgaaccactgccttaactattagagataccaaaaagtcccaaactcaaaagcta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 actttgtgaaccactgccttaactattagagataccaaaaagtcccaaactcaaaagcta 518

                                                                       
Query: 61  acaaatgcccacatggaacagacaagcctgtcctctttatttcagagccacttgtttgct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 acaaatgcccacatggaacagacaagcctgtcctctttatttcagagccacttgtttgct 458

                                                                       
Query: 121 ctagcactaatgcatcaggagggaaaggaatagataaaaactgaatgttctgacccaaca 180
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 457 ctagcactaatgcatcaggagggaaaggaatagataaaaactgaatgtcctgacccaaca 398

                                                                       
Query: 181 ctgaagcacatcctgaaaaacactttataaattattgaacttgctcttaccttcagatga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 ctgaagcacatcctgaaaaacactttataaattattgaacttgctcttaccttcagatga 338

                                                                       
Query: 241 agccattcagatcaagaaagacatagtaattatgtgcttcattacaggtgtgattatcaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 agccattcagatcaagaaagacatagtaattatgtgcttcattacaggtgtgattatcaa 278

                                                                       
Query: 301 atataagcacacaaattacaaatagaagatttcacacaatatttaaattttcaaaaagca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 atataagcacacaaattacaaatagaagatttcacacaatatttaaattttcaaaaagca 218

                                                                       
Query: 361 aataaaatatgtgaatcaattaattacaaattataaaataaataaaaattaaaatgtcaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 aataaaatatgtgaatcaattaattacaaattataaaataaataaaaattaaaatgtcaa 158

                                                                       
Query: 421 ccaatgatacaaactccttgagacattcagcattagcagtctagtacattattttaaatg 480
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157 ccaatgatacaaactcattgagacattcagcattagcagtctagtacattattttaaatg 98

              
Query: 481 gca 483
           |||
Sbjct: 97  gca 95


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 483
Length of database: 883
Length adjustment: 10
Effective length of query: 473
Effective length of database: 873
Effective search space:   412929
Effective search space used:   412929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)