Query= MSMg01no387_o18.b1 MSMg01no387_o18.b1 CHROMAT_FILE:
MSMg01no387_o18.b1 PHD_FILE: MSMg01no387_o18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:31:07 2005
(374 letters)
>mm_chr1_35476851_35477624
Length = 774
Score = 687 bits (355), Expect = 0.0
Identities = 367/371 (98%), Gaps = 2/371 (0%)
Strand = Plus / Minus
Query: 5 gaattcttagcatttgcgttgtgggccatccatggagggctcaggttactttaggtgagc 64
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 gaattcttagcatttgtgttgtgggccatccatggagggctcaggttactttaggtgagc 515
Query: 65 tgttggcttttgtcacattagtcacttcccatctccacatggttaccatcatgctacctc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 tgttggcttttgtcacattagtcacttcccatctccacatggttaccatcatgctacctc 455
Query: 125 cacatgactgacacctgttcatcaccccatcttcatatggctgacacctgttcatcaccc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 cacatgactgacacctgttcatcaccccatcttcatatggctgacacctgttcatcaccc 395
Query: 185 catctccacatggctaccacgtgttcatcactctacctccacatgccatggttccaggta 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 catctccacatggctaccacgtgttcatcactctacctccacatgccatggttccaggta 335
Query: 245 catttctattctacaatccaagacatccaggatataaattgagaggagaaaaagtctctt 304
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 334 catttctattctacaatccaagacatccaggatataaattgagaggag-aaaagtctctt 276
Query: 305 ctcttttgttggaaagtgacagtttccacagaagtctcagtgtcg-tttttttcttcacc 363
||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 275 ctcttttgttggaaagtaacagtttccacagaagtctcagtgtcgttttttttcttcacc 216
Query: 364 ctcatccctca 374
|||||||||||
Sbjct: 215 ctcatccctca 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 374
Length of database: 774
Length adjustment: 9
Effective length of query: 365
Effective length of database: 765
Effective search space: 279225
Effective search space used: 279225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no387_o18.g1 MSMg01no387_o18.g1 CHROMAT_FILE:
MSMg01no387_o18.g1 PHD_FILE: MSMg01no387_o18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:31:07 2005
(493 letters)
>mm_chr1_35371414_35372306
Length = 893
Score = 915 bits (473), Expect = 0.0
Identities = 488/493 (98%)
Strand = Plus / Plus
Query: 1 cctgcttgctgcttactataaagccttgccccatagacatttggggctcgaacaccacca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctgcttgctgcttactataaagccttgccccatagacatttggggctcgaacaccacca 260
Query: 61 aaatcatcttgcatgatggaggtgtgttgggggccggaagaggtgagcttgctcaaatag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaatcatcttgcatgatggaggtgtgttgggggccggaagaggtgagcttgctcaaatag 320
Query: 121 aataaagatcctactgtgagttgcatcatatctgttcctgtgtgtgttttggggcaatca 180
|||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aataaagaccctgctgtgagttgcatcatatctgttcctgtgtgtgttttggggcaatca 380
Query: 181 ctaacaattccctggcataacaagagtatgctgtaagaggagcatgaaaggtagagttag 240
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 381 ctaacaattccctggcataacaagagtatgctgtaagaggagcatggaaggtagagttag 440
Query: 241 ccagtgacaagcccacagctaaacttgtttggtctattggttctcatgtctgcagcaaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 441 ccagtgacaagcccacagctaaacttgtttggtctattggttctcatgtctgcagaaaaa 500
Query: 301 cttaatgggcacaccagaaaacgcaagcccatcagacataagcaaatgattacagagatg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cttaatgggcacaccagaaaacgcaagcccatcagacataagcaaatgattacagagatg 560
Query: 361 aaacatgcatgcattcagaggagaccagacaaatgcaggcatttgatggccaacttcctt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaacatgcatgcattcagaggagaccagacaaatgcaggcatttgatggccaacttcctt 620
Query: 421 cacatatcaatgccaggaagacaccccctttctctcagaaacaggatttgtgaacatgtc 480
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 621 cacatatcaatgccaggaagacaccccctttctcccagaaacaggatttgtgaacatgtc 680
Query: 481 tcatctctcctat 493
|||||||||||||
Sbjct: 681 tcatctctcctat 693
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 893
Length adjustment: 10
Effective length of query: 483
Effective length of database: 883
Effective search space: 426489
Effective search space used: 426489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
