Query= MSMg01no388_b06.b1 MSMg01no388_b06.b1 CHROMAT_FILE:
MSMg01no388_b06.b1 PHD_FILE: MSMg01no388_b06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:31:19 2005
(548 letters)
>mm_chr1_169191673_169192622
Length = 950
Score = 1029 bits (532), Expect = 0.0
Identities = 544/548 (99%), Gaps = 2/548 (0%)
Strand = Plus / Minus
Query: 3 ggaattcctctctgcggaaacag-ttctttttttttttctttctttgcccttaaatgttg 61
||||||| ||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct: 750 ggaattcttctctgcggaaacagtttttttttttttttctttctttgcccttaaatgttg 691
Query: 62 ctgtgagggaagccagaaaaactggaaaagttgcttttattaaagcaattcttaaaaatt 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 ctgtgagggaagccagaaaaactggaaaagttgcttttattaaagcaattcttaaaaatt 631
Query: 122 acattaattagtatatgtgtcagtgtgagcatccactggcttgccctctggggtcagtcc 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 acattaattagtatatgtgtcagtgtgagcatccactggcttgccctctggggtcagtcc 571
Query: 182 tttcca-ccaggtgggttccgaggatctggttcagattgtcaagctcggcgccaggcacc 240
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 tttccacccaggtgggttccgaggatctggttcagattgtcaagctcggcgccaggcacc 511
Query: 241 tttccccgggctccccagtggacggcagagggtgcggctcagtgtacgtgtgagtctctc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 tttccccgggctccccagtggacggcagagggtgcggctcagtgtacgtgtgagtctctc 451
Query: 301 acccagcctccaccgagttttgctgagtggcttctggcaagcaaggccttgcctctagaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 acccagcctccaccgagttttgctgagtggcttctggcaagcaaggccttgcctctagaa 391
Query: 361 cttggttgtcttccaggtaaagtaggtgtagtcagcgacacctgcttctctccacacact 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 cttggttgtcttccaggtaaagtaggtgtagtcagcgacacctgcttctctccacacact 331
Query: 421 ggctggattaacaggtaagacggttaccttggtgacccccgatggcttggaatagaacct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 ggctggattaacaggtaagacggttaccttggtgacccccgatggcttggaatagaacct 271
Query: 481 gatagctggagagctgtgtgtccttccttagagctgcattgaacagctttgagagtccct 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 gatagctggagagctgtgtgtccttccttagagctgcattgaacagctttgagagtccct 211
Query: 541 tctgggcc 548
||||||||
Sbjct: 210 tctgggcc 203
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 548
Length of database: 950
Length adjustment: 10
Effective length of query: 538
Effective length of database: 940
Effective search space: 505720
Effective search space used: 505720
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no388_b06.g1 MSMg01no388_b06.g1 CHROMAT_FILE:
MSMg01no388_b06.g1 PHD_FILE: MSMg01no388_b06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:31:19 2005
(502 letters)
>mm_chr1_169019876_169020777
Length = 902
Score = 917 bits (474), Expect = 0.0
Identities = 495/502 (98%)
Strand = Plus / Plus
Query: 1 catagtagtgcttcacacagaatggtgtaatgtctgagaactgccgggcatgttagagac 60
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catagtagtgcttcatacagaatggtgtaatgtctgagaactgccgggcatgttagagac 260
Query: 61 tgtatatgttgtattcacaagagagtgcccaagatagaaagaattcattttcctattcca 120
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 261 tgtatatgttgtattcacaagagagtgcccaagatagaaagaattcattttcatattcca 320
Query: 121 cctccagcatctaccaggttcccagagcaagtagatttctcctgcattcatagcaccatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctccagcatctaccaggttcccagagcaagtagatttctcctgcattcatagcaccatg 380
Query: 181 ccttcttgccccattaatcagactgtcctgcaccaagtcccatctctcagggtcctgctc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccttcttgccccattaatcagactgtcctgcaccaagtcccatctctcagggtcctgctc 440
Query: 241 tctgatttgaaacagttcagtcagtgggtgctaaagagttgagcgttacacttcttgggt 300
|||||| | ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 441 tctgataggcaacagttcagtcagtgggtgctaaagagttgagtgttacacttcttgggt 500
Query: 301 gacctttaccttttaattggggctatagacaatgccttaatctgaaggagtagcttgaat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gacctttaccttttaattggggctatagacaatgccttaatctgaaggagtagcttgaat 560
Query: 361 gctgggaatttcaggtgcagaagtgggccagtaagagagattagtttttttcttaggagg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gctgggaatttcaggtgcagaagtgggccagtaagagagattagtttttttcttaggagg 620
Query: 421 gcattttagagcctcctctttcccatacccatctttaaagtcagctcatacatacatgag 480
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gcattttagagcctcctcttccccatacccatctttaaagtcagctcatacatacatgag 680
Query: 481 cacaaacaagcacacttaccta 502
||||||||||||||||||||||
Sbjct: 681 cacaaacaagcacacttaccta 702
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 502
Length of database: 902
Length adjustment: 10
Effective length of query: 492
Effective length of database: 892
Effective search space: 438864
Effective search space used: 438864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
