Query= MSMg01no388_b24.b1 MSMg01no388_b24.b1 CHROMAT_FILE:
MSMg01no388_b24.b1 PHD_FILE: MSMg01no388_b24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:31:23 2005
(559 letters)
>mm_chr1_40914444_40915402
Length = 959
Score = 942 bits (487), Expect = 0.0
Identities = 517/533 (96%), Gaps = 12/533 (2%)
Strand = Plus / Minus
Query: 9 gaattcatctttctattcatttctgcttatgagcctccaaccgtccctggagacccaccc 68
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 gaattcatctttctattcatttctgcttatgagcctccaaccgtccctggagacccaccc 563
Query: 69 aaagcaagtcttgtgattttcctcattaatgtgtttcccaacactactgggtgtttcccg 128
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 562 aaagcaagtcttgtgattttcctcattactgtgtttcccaacactactgggtgtttcccg 503
Query: 129 agaatccccccacacctgcagcctccggcccaattctggaccagtcatctgtgttcctct 188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 agaatccccccacacctgcagcctccggcccaattctggaccagtcatctgtgttcctct 443
Query: 189 cacattctaagctcctctataagactagcttggtaactgtcatgaaaatacaaatcacat 248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 cacattctaagctcctctataagactagcttggtaactgtcatgaaaatacaaatcacat 383
Query: 249 tatggctgagttgaataagtcatcatccactgagtggcactatttaggtgtcatccagac 308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 tatggctgagttgaataagtcatcatccactgagtggcactatttaggtgtcatccagac 323
Query: 309 ctgatgatgtcactgttctccacagaaaacaacctgtaaagcttgcctggctctcatgca 368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 ctgatgatgtcactgttctccacagaaaacaacctgtaaagcttgcctggctctcatgca 263
Query: 369 ctaactacacctatcggtttacctttctttctgcacatgcctataattacaacactctgt 428
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 ctaactacacctatcggcttacctttctttctgcacatgcctataattacaacactctgt 203
Query: 429 ctgtctgtctgtctgtttctcttcctctctctgtttctccctctctgtctctccctctct 488
|||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 ctgtctgtct--------ctcttcctctctctgtttctccctctctgtctctccctctct 151
Query: 489 gtctctctctctgtctctctctctctgngtctctctctctgtctctctctctc 541
|||||||||||||| ||||||||| | ||||||||||| ||||||||||||
Sbjct: 150 gtctctctctctgtgtctctctct-t---tctctctctctctctctctctctc 102
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 69
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 959
Length adjustment: 10
Effective length of query: 549
Effective length of database: 949
Effective search space: 521001
Effective search space used: 521001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no388_b24.g1 MSMg01no388_b24.g1 CHROMAT_FILE:
MSMg01no388_b24.g1 PHD_FILE: MSMg01no388_b24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:31:23 2005
(241 letters)
>mm_chr1_40721806_40722447
Length = 642
Score = 377 bits (195), Expect = e-109
Identities = 231/243 (95%), Gaps = 3/243 (1%)
Strand = Plus / Plus
Query: 1 agacgctcctgctgggatagagagaaggtatgtggggatacgtgcttaatcttgtgtggc 60
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 201 agacgctcctgctgggatagagagaaggtgtgtggggatacgtgcttaatcttgtgtggc 260
Query: 61 ttcaggtcttattcctttttggaaggatctgcagccttggaaagcggtgaatgctcaagg 120
||||||||||||||||||||||||||||||||| | |||| |||||||||||||||| ||
Sbjct: 261 ttcaggtcttattcctttttggaaggatctgcaacattgggaagcggtgaatgctca-gg 319
Query: 121 -aaaacaatacaactgagacaggaaggaacccaagtggctctcttgatagtcctgtggtc 179
||||| |||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct: 320 caaaacgatacaactgagacaggaaggaacccaagtggctctcttgatagtcctgggggc 379
Query: 180 tcaggggagcaggagcccttcccagtctccactgctgtgctccagg-accttcttagtca 238
||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct: 380 tcaggagagcaggagcccttcccagtctccactgctgtgctccaggcaccttctaagtca 439
Query: 239 tct 241
|||
Sbjct: 440 tct 442
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 642
Length adjustment: 9
Effective length of query: 232
Effective length of database: 633
Effective search space: 146856
Effective search space used: 146856
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
