BAC Information

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BAC

Clone NameMSMg01-388D02
Chromosome1 (Build37)
Map Location 141,649,124 - 141,649,702
singlet/doubletsinglet
Overlap geneEG214403
Upstream geneLhx9, 2310009B15Rik, 1700019P21Rik, LOC100042623, Dennd1b, Crb1, Zbtb41, Aspm, F13b, Cfhr1, EG624286
Downstream geneBC026782, LOC545399, EG545367, Cfh, Kcnt2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-388D02.T7 (MSMg01no388_d02.b1)MSMg01-388D02.TJ (MSMg01no388_d02.g1)
ACCAG490746AG490747
length764750
length of high quality
(start - end)
632 (27 - 658)586 (67 - 652)
definitionCHROMAT_FILE: MSMg01no388_d02.b1 PHD_FILE: MSMg01no388_d02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:31:28 2005CHROMAT_FILE: MSMg01no388_d02.g1 PHD_FILE: MSMg01no388_d02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:31:28 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
GTCCGCTATACGACTCACTATATTTGAGAGGATCCGCGGAATTCTGTAAC
TAATAATAATAGTACATGGTTTAAGCTCAACGACAAATTAGACTATGAAT
GTCTCATTGGATATGAAAATGAATATAAACATACCAAAGGCTCTATAACG
TGTACTTATTATGGATGGTCTGATACGCCCTCATGTTATGGTGAGTGATA
TTTTCTCTGGAATATTTTTTAAAGAAAAATATTGAACTTATGTGCTAAAA
ATTGAAATTCTTAGAATCTTCCTTATGATTTTATGTAACCTATGAAAAAG
GACTATTTTCTAAGACGTTGATGTTTATATTTGCATTTATTATTTCATTA
CATTCACTTATTTATCCTGTGTGTGTACATTTATGGAGGTATATATACTG
CAATACACATGTAGGTGTCAGAGAACCTGTGGGAGTCAGCTCTCTCTTTT
CATCATAAGTGTCTGAGGTATTGAATTCAGGACTCCAGGCTTAGAGGCAA
GCACTCTCACTGACAGCCATCATTCTGGCCTGATAATCTGTATTTAAAAT
AATATATTTATCAGTTGTATATGATACCGTTATGATTCTAACAATTAAGA
CCAAGGATCAAGAAATTTTAATTTTGAGGGTATATTGGACTACATACTAA
GTTCTGTTTCCAAAAGCAAACAAACCAAAAATTTCATTAAATTAATGAAT
CCTTTGTGTAGCCTGGGTATATCATGTATCTCTTATTAAAAGACNATACT
TTTAATATTTCAGC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAAGCACC
TGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACA
ATCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTC
AGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGTACACTCCTCC
ATTGGTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCCGTCTGG
CGGTTCCTCTTAAAATTGGACATAGTACTACCGGAGGAGCCAGCAATACC
TCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGACACAT
GCTCCACTATGTTCATAGCAGCCCTATTTATAATAGCCAGAAACTGGAAA
GAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACAT
CTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAAT
TCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACA
CATTCACAAAGGAACTCACACAATATGTACTCACTGATAAGTGGATATTA
GCCCAAAACCTAAGATACCCAAGATATAAGATACAATTTCCTAAATACTT
GAAACTCAAGAAAAATGAAGACTGAAATGTGGACACTATGCCCTTGCTTN

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no388_d02.b1 MSMg01no388_d02.b1 CHROMAT_FILE:
MSMg01no388_d02.b1 PHD_FILE: MSMg01no388_d02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:31:28 2005
         (632 letters)



>mm_chr1_141649124_141650155
          Length = 1032

 Score = 1019 bits (527), Expect = 0.0
 Identities = 566/579 (97%), Gaps = 1/579 (0%)
 Strand = Plus / Minus

                                                                       
Query: 13  gaattctgtaactaataataatagtacatggtttaagctcaacgacaaattagactatga 72
           ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 579 gaattctgtaactaagaataatagtacatggtttaagctcaatgacaaattagactatga 520

                                                                       
Query: 73  atgtctcattggatatgaaaatgaatataaacataccaaaggctctataacgtgtactta 132
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 atgtctcattggatatgaaaatgaatataaacataccaaaggctctataacgtgtactta 460

                                                                       
Query: 133 ttatggatggtctgatacgccctcatgttatggtgagtgatattttctctggaatatttt 192
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 ttatggatggtctgatacgccctcatgttatggtgagtgatattttctctggaatatttt 400

                                                                       
Query: 193 ttaaagaaaaatattgaacttatgtgctaaaaattgaaattcttagaatcttccttatga 252
           ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 399 ttaaagaaaaatagtgaacttgtgtgctaaaaattgaaattcttagaatcttccttatga 340

                                                                       
Query: 253 ttttatgtaacctatgaaaaaggactattttctaagacgttgatgtttatatttgcattt 312
           |||||||||||||| |||||||||| |||||||||||| |||||||||||||||||||||
Sbjct: 339 ttttatgtaacctacgaaaaaggaccattttctaagacattgatgtttatatttgcattt 280

                                                                       
Query: 313 attatttcattacattcacttatttatcctgtgtgtgtacatttatggaggtatatatac 372
           ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct: 279 attatttcattacattcacttatttatcctgtgtgtgtacatttatgaaggtatatgtac 220

                                                                       
Query: 373 tgcaatacacatgtaggtgtcagagaacctgtgggagtcagctctctcttttcatcataa 432
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 tgcaatacacatgtaggtgtcagagaacctgtgggagtcagctctctcttttcatcataa 160

                                                                       
Query: 433 gtgtctgaggtattgaattcaggactccaggcttagaggcaagcactctcactgacagcc 492
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 159 gtgtctgaggtattgaattcaggactcaaggcttagaggcaagcactctcactgacagcc 100

                                                                       
Query: 493 atcattctggcctgataatctgtatttaaaataatata-tttatcagttgtatatgatac 551
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 99  atcattctggcctgataatctgtatttaaaataatatattttatcagttgtatatgatac 40

                                                  
Query: 552 cgttatgattctaacaattaagaccaaggatcaagaaat 590
           ||||||||||||| ||||||||||| |||||||||||||
Sbjct: 39  cgttatgattctagcaattaagacccaggatcaagaaat 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 632
Length of database: 1032
Length adjustment: 10
Effective length of query: 622
Effective length of database: 1022
Effective search space:   635684
Effective search space used:   635684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)