Query= MSMg01no388_g19.b1 MSMg01no388_g19.b1 CHROMAT_FILE:
MSMg01no388_g19.b1 PHD_FILE: MSMg01no388_g19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:31:45 2005
(528 letters)
>mm_chr1_28674289_28675221
Length = 933
Score = 932 bits (482), Expect = 0.0
Identities = 516/530 (97%), Gaps = 7/530 (1%)
Strand = Plus / Plus
Query: 5 gaattca-ctagactgcacattttgtcagggtgaagaatgtgttcattttgcctcttcca 63
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcacct-gactgcacattttgtcagggtgaagaatgtgttcattttgcctcttcca 263
Query: 64 ttgaacagagtattatgacattcatccattttcaacagcatccacctttgatgttacaga 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ttgaacagagtattatgacattcatccattttcaacagcatccacctttgatgttacaga 323
Query: 124 gtaaaatggaactaatcatccaagcaagtgtagcataaaattacccaggtgagccactga 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gtaaaatggaactaatcatccaagcaagtgtagcataaaattacccaggtgagccactga 383
Query: 184 tgacaggggtgttaacacagtgacagttcactgtttcaacacaagccatagtgccagagt 243
|||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct: 384 tgacaggggtgttaacacagtgacagttcagtgtttcaacacaagccatactgccagagt 443
Query: 244 cacccgttctcttctcaagggtacagaagttgtaggctctattgtaggggttcaggtttc 303
|||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 caccagttctcgtctcaagggtacagaagttgtaggctctattgtaggggttcaggtttc 503
Query: 304 cttaaaacctgatgaacagccatttctcaggtttcaagacttcccaacctcactagttat 363
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct: 504 cttaaaacctgatgaacagccatttctcaggtttcaagacttgccaacatcactagttat 563
Query: 364 tttgaatcacatttcaatgaccataaaataaata-----tttatcgtgtaatagaagcca 418
|||||||||||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct: 564 tttgaatcacatttcaatgaccataaaataaataaaatatttatcgtgtaatagaagaca 623
Query: 419 gtttctcaagaacagacaagtataaaacttgccagccatttaataggagcttacacagga 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gtttctcaagaacagacaagtataaaacttgccagccatttaataggagcttacacagga 683
Query: 479 gcacctttacattatatattgttttatctataggaggagagtaaagaaga 528
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 gcacctttacattatatattgttttatctataggaggagagtaaagaaga 733
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 528
Length of database: 933
Length adjustment: 10
Effective length of query: 518
Effective length of database: 923
Effective search space: 478114
Effective search space used: 478114
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no388_g19.g1 MSMg01no388_g19.g1 CHROMAT_FILE:
MSMg01no388_g19.g1 PHD_FILE: MSMg01no388_g19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:31:45 2005
(452 letters)
>mm_chr1_28873252_28874103
Length = 852
Score = 801 bits (414), Expect = 0.0
Identities = 445/456 (97%), Gaps = 6/456 (1%)
Strand = Plus / Minus
Query: 1 tgttttcatctggcataaactaagacctaacagaattggttttcagtacaat-attttac 59
||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |||
Sbjct: 531 tgttttcatctggcataaactaagacctaacagaattggttttcagtac-atcattgtac 473
Query: 60 aagctagggggatttatcttactcctatataggatgtccttggaggtaaatgtgctaata 119
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 aagctaggggaatttatcttactcctatataggatgtccttggaggtaaatgtgctaata 413
Query: 120 ataatagtctatttaaaattgttaatagaattctatactgcagcaatcacttgaaaatgg 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 ataatagtctatttaaaattgttaatagaattctatactgcagcaatcacttgaaaatgg 353
Query: 180 aatgcttattactaagcaaaatgactttacattcattgaacttcttgggtatgttttaaa 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 352 aatgcttattactaagcaaaatgactttacattcattgaacttcttgggtatgtttttaa 293
Query: 240 aattgctacctcagtcataactattgtacatttctcaaaaatgtaaatcagatagcttct 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 aattgctacctcagtcataactattgtacatttctcaaaaatgtaaatcagatagcttct 233
Query: 300 aagatatcttataggaacaataaaaatgaaaggagagagacagaga--gaaagagagaga 357
|||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 232 aagatatcttataggaacaataaaaatgaaaggagagagagagagaaagaaagagagaga 173
Query: 358 gagaacctaatgcaggtacagatgatggataatggtagt-ataattaataaaatataaaa 416
||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct: 172 gagaacctaatgcaggtacagatgatggataatggtagtga-aattaataaaatataaaa 114
Query: 417 tgtttgttttaggtagaaaatcatatagctttacat 452
||||||||| ||||||||||||||||||||||||||
Sbjct: 113 tgtttgtttcaggtagaaaatcatatagctttacat 78
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 452
Length of database: 852
Length adjustment: 10
Effective length of query: 442
Effective length of database: 842
Effective search space: 372164
Effective search space used: 372164
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
