GGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTGTTCA
GTTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTTCTGAAGTCCACC
TTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTATCTGATTTAGG
ATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTTTGTCTTATTGA
CGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTAGGTCCCATTTG
TCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTCTGTTCAGGAATTT
TTCCCCTGTGTCCATATCTTCAAGGCTTTTCCCCACTTTCTCCTCTATAA
GTTTCAGTGTCTCTGGTTTTAAATGAAGTTCCTTGATCCACTTAGATTTG
ACCTTAGTACAAGGAGATAAGTATGGATCGATTCTCATTCTTCTACATGA
TAACAACCAGTTGTGTCAGCACCAATTGTTGAAAATGCTGTCTTTCTTCC
ACTGGATGGTTTTAGCTCCCTTGTCGAAGATGAAGTGACCATAGGTGTGT
GGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGGNCTACTTGTCTGTC
TCTATACCAGTACCATGCAGTTTTTATCACAATTGCTCTGTAGTAAAGCT
TTAGGTCACGCATGGCGATTCCACCCAAGTTCTTTTATCCTTGAGAAAAG
GTTTGCTATCCCACGTCTTTGGTGTTCCCCAAGAATTTGCCCATTGTCCT
CTCTAATACGCG

CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXATGTTTTCCATAGAAAGGTACACACTGTTT
GGTGAAGGAAGATACTCTTTCAAAAGAAGGCAATTCTCAAAGGCCAGTGA
GTAATCATCAAGACCTTCTTAAGCAGGAACATTTGGTTAAATGACAGTAG
GTATTGAGAAAGTAATAGGAGAGTTAAAGAAATAGATACATGGCTAATAA
ATTGCTAATGCATAGATTATTTGTCCATTTTATGAAATGAAACACACTAT
AAAATTTCTTTATAATGATAAGACATGTCTATATTATCTCTAATTGCACC
ATATTATTCATTTACTTCTCTAACAGTTTATTAGTACAAATTTTTCTTGG
TAAGTTCTATGCGAAAGGTTCTACGTGGGCTAGCCAAATTAATGGCTTTG
ACCATTCTTACTAAAGGTGATACGCTGATATGAAAGCTTAAGTGAAATGA
AAATTTAAATGTGTGTGTGAAGTATGAACTTGGCTATCCAGTTGGTGATA
ATATCACTATGTGTTAAAATTAGTTTTAGCCCTTCAAACCGTATGCTTTT
GACCTTCTTCACAGTTCCCATATGCAATTTATTTTATCTTTAATAAAAGA
ATATGAGACACATTTTAACATTCCAGGATCACAGATCTTTGTCTCATATA
TATTTTACTTTGAAATTCACTAGAGATAGGCAN

Query= MSMg01no388_l14.g1 MSMg01no388_l14.g1 CHROMAT_FILE:
MSMg01no388_l14.g1 PHD_FILE: MSMg01no388_l14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:32:07 2005
         (644 letters)



>mm_chr1_144085191_144086230
          Length = 1040

 Score = 1203 bits (622), Expect = 0.0
 Identities = 637/644 (98%), Gaps = 4/644 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgttttccatagaaaggtacacactgtttggtgaaggaagatactctttcaaaagaagg 60
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 840 atgtttcccatagaaaggtacacactgtttggtgaaggaagatactctttcaaaagaagg 781

                                                                       
Query: 61  caattctcaaaggccagtgagtaatcatcaagaccttcttaagcaggaacatttggttaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 780 caattctcaaaggccagtgagtaatcatcaagaccttcttaagcaggaacatttggttaa 721

                                                                       
Query: 121 atgacagtaggtattgagaaagtaataggagagttaaagaaatagatacatggctaataa 180
           ||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 atgacagtaggtattg----agtaataggagagttaaagaaatagatacatggctaataa 665

                                                                       
Query: 181 attgctaatgcatagattatttgtccattttatgaaatgaaacacactataaaatttctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 attgctaatgcatagattatttgtccattttatgaaatgaaacacactataaaatttctt 605

                                                                       
Query: 241 tataatgataagacatgtctatattatctctaattgcaccatattattcatttacttctc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 tataatgataagacatgtctatattatctctaattgcaccatattattcatttacttctc 545

                                                                       
Query: 301 taacagtttattagtacaaatttttcttggtaagttctatgcgaaaggttctacgtgggc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 taacagtttattagtacaaatttttcttggtaagttctatgcgaaaggttctacgtgggc 485

                                                                       
Query: 361 tagccaaattaatggctttgaccattcttactaaaggtgatacgctgatatgaaagctta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 tagccaaattaatggctttgaccattcttactaaaggtgatacgctgatatgaaagctta 425

                                                                       
Query: 421 agtgaaatgaaaatttaaatgtgtgtgtgaagtatgaacttggctatccagttggtgata 480
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 424 agtgaaatgaaaatttaaatgtgtgtgtgaagtatgaacttgactatccagttggtgata 365

                                                                       
Query: 481 atatcactatgtgttaaaattagttttagcccttcaaaccgtatgcttttgaccttcttc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 atatcactatgtgttaaaattagttttagcccttcaaaccgtatgcttttgaccttcttc 305

                                                                       
Query: 541 acagttcccatatgcaatttattttatctttaataaaagaatatgagacacattttaaca 600
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 acagttccaatatgcaatttattttatctttaataaaagaatatgagacacattttaaca 245

                                                       
Query: 601 ttccaggatcacagatctttgtctcatatatattttactttgaa 644
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 ttccaggatcacagatctttgtctcatatatattttactttgaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 644
Length of database: 1040
Length adjustment: 10
Effective length of query: 634
Effective length of database: 1030
Effective search space:   653020
Effective search space used:   653020
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)