Query= MSMg01no388_n02.b1 MSMg01no388_n02.b1 CHROMAT_FILE:
MSMg01no388_n02.b1 PHD_FILE: MSMg01no388_n02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:32:14 2005
(476 letters)
>mm_chr1_41617869_41618744
Length = 876
Score = 830 bits (429), Expect = 0.0
Identities = 456/471 (96%), Gaps = 10/471 (2%)
Strand = Plus / Minus
Query: 6 gaattcatgtcccttcccttttagcaactccttctggttactgtgctattagttgctata 65
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 856 gaattcatgtcccttcaattttagcaactccttctggttactgtgctattagttgctata 797
Query: 66 atgaccacccttagcttggtgttgtatccaaacctgctaaataagacatgagttatcttg 125
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 ataaccacccttagcttggtgttgtatccaaacctgctaaataagacatgagttatcttg 737
Query: 126 tgcacacacacacacacacacacacacacacacacacacacacacacacacacacacaca 185
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 tgcacacacacacacacacacacacacacacacacacacacacacacacacacacac--- 680
Query: 186 catacatacaaattgacccccacctccatggagcttaggcaaacctatcatttgtgatat 245
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 -------acaaattgacccccacctccatggagcttaggcaaacctatcatttgtgatat 627
Query: 246 ccctggtgagtcaatgttaaaagagcacagtgccaaaactgttggctttggtttcagaga 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 ccctggtgagtcaatgttaaaagagcacagtgccaaaactgttggctttggtttcagaga 567
Query: 306 acccaaagctcagaagtgaaacagtaaaaattatcttatatttcctcttatggagcatag 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 acccaaagctcagaagtgaaacagtaaaaattatcttatatttcctcttatggagcatag 507
Query: 366 gcaaacagccacttaaaaatgatatgaaaaagtaactcatacaagaaatgcagcttgtac 425
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 gcaaacacccacttaaaaatgatatgaaaaagtaactcatacaagaaatgcagcttgtac 447
Query: 426 atatatgaaattaatagagaataaaaatatttatacaactattataacaat 476
||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 atataagaaattaatagagaataaaaatatttatacaactattataacaat 396
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 73
Number of extensions: 32
Number of successful extensions: 32
Number of sequences better than 10.0: 1
Number of HSP's gapped: 23
Number of HSP's successfully gapped: 1
Length of query: 476
Length of database: 876
Length adjustment: 10
Effective length of query: 466
Effective length of database: 866
Effective search space: 403556
Effective search space used: 403556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no388_n02.g1 MSMg01no388_n02.g1 CHROMAT_FILE:
MSMg01no388_n02.g1 PHD_FILE: MSMg01no388_n02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:32:14 2005
(644 letters)
>mm_chr6_106148250_106149293
Length = 1044
Score = 975 bits (504), Expect = 0.0
Identities = 518/524 (98%), Gaps = 3/524 (0%)
Strand = Plus / Minus
Query: 1 actatgaaaagagataatcaaatgttggagcacactggcttagaaacctcagtttagata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 actatgaaaagagataatcaaatgttggagcacactggcttagaaacctcagtttagata 465
Query: 61 tagccccaggattctacatttgtaggatctgaaaatttaagtgttagaattaatttctag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 tagccccaggattctacatttgtaggatctgaaaatttaagtgttagaattaatttctag 405
Query: 121 aagtatttggtgctcatagataggagagtggtatctttgggtatttatctcaataatttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 aagtatttggtgctcatagataggagagtggtatctttgggtatttatctcaataatttt 345
Query: 181 catggaaacagtaaagatcaaaattccatactgattcataatcagtgaacaaagtttata 240
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 344 catggaaacaataaagatcaaaattccatactgactcataatcagtgaacaaagtttata 285
Query: 241 tttacataaaattaataaattcactttaatttttacagatttactgaatttaagataaag 300
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 tttacgtaaaattaataaattcactttaatttttacagatttactgaatttaagataaag 225
Query: 301 tttaaataataaatccatttgtatgcaatggtggcacaaacctttaattccagcactcag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 224 tttaaataataaatccatttgtatgcaatggtggcacaaacctttaattccagcactcag 165
Query: 361 gaggcagagaggaaggtgaatctgagttcaaagccagcctggtctatagagtgaatttca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 164 gaggcagagaggaaggtgaatctgagttcaaagccagcctggtctatagagtgaatttca 105
Query: 421 gggcagcccaggctacacaaagaaaccctattttaaaaaatctaaagaaataaatatact 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104 gggcagcccaggctacacaaagaaaccctattttaaaaaatctaaagaaataaatatact 45
Query: 481 aacaattatgaatataattgataacctttc---cttctctcatc 521
|||||||||||||||||||||||||||||| |||||||||||
Sbjct: 44 aacaattatgaatataattgataacctttccttcttctctcatc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 644
Length of database: 1044
Length adjustment: 10
Effective length of query: 634
Effective length of database: 1034
Effective search space: 655556
Effective search space used: 655556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
