BAC Information

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BAC

Clone NameMSMg01-389E15
Chromosome1 (Build37)
Map Location 140,728,428 - 140,728,791
singlet/doubletsinglet
Overlap geneLhx9
Upstream geneLOC100043143, Ptprc, LOC100042596, Atp6v1g3, LOC100042600, Nek7, LOC545363, LOC667745
Downstream gene2310009B15Rik, 1700019P21Rik, LOC100042623, Dennd1b, Crb1, Zbtb41, Aspm, F13b, Cfhr1, EG624286, EG214403, BC026782
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-389E15.T7 (MSMg01no389_e15.b1)MSMg01-389E15.TJ (MSMg01no389_e15.g1)
ACCAG491581AG491582
length761747
length of high quality
(start - end)
247 (169 - 415)364 (81 - 444)
definitionCHROMAT_FILE: MSMg01no389_e15.b1 PHD_FILE: MSMg01no389_e15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:32:50 2005CHROMAT_FILE: MSMg01no389_e15.g1 PHD_FILE: MSMg01no389_e15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:32:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCTCACAATCTGCGGCGGTAATAGAATACTATTCCGAGAGGACCGCGGA
ATTCTTTGTTTATCTCTGCACCCCATTTTAATGGGGTTATTTGATTTTCT
AAAGTACACCTTCTTGAGTTCTTTAAATATATTGGATATTAGTCCCCTAT
CTGATTTAGGATTGGGAAAAATCCTTTCCCAATCTGCTGGTGGCCTTTTT
GTCTTATTGACAATGTCTTTTGCCTTACAGAAGCTTTGCAATTTTATGAG
GTCCCATTTGTCAATTCTCAATTTTACAGCACAAGCCATTGCTGTTCTAT
TCAGGAATTTTTCCCCTGTGTTCCTTATCTTCAAGGATTTTCTCCACTTT
CTCCTCTATAAGTTTCAGCGTCTGTGGTTTTATGTGGAGTTTCTTGATCC
ATTGAGACTTGACCTTACCATAAGGAGATAAGAATGGACCAATTCGCATT
CTTCTACATGATAACTGCCAATTGTGCCAGCACCATTTGTTGAACATGCT
GTCTTTTTTCCACTGGATGGCTTTAGCTGCCTTGTCAAAGATCAAGTGAC
CATATGTGTGCGGCCTCATTTCTGGGCCTTCCCCTCTATCCCATTGGCCT
ACCCTGCCTGTTACTATACCACTACCCATGCGCTTAATATCCACTTACCC
TTTCCTACCGTCTTTCCATCCATTTACCATCGTTAAAATCCCCCTATATT
CTTTTTTCCCTCCGAACACCACTTTCTGCCCCTCCCACCTCTCTTGCCCT
CCCCCCAGTAA
NNCCCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCTGGTGTTGAATTTCGT
TCCCAGACTTTTGGGAAGATTTATAAGATTACACAGGGTTGCCATGAGCG
ACCTGCCATCTCCCCCTCAGTGACCAATAGCAGACATTTTCTGCTCTCCT
GTGCTTCTCTGGTAGTTTGGGGTCTGTGACTGGGAAGAGTTTGCACAGAA
TTTGTCTTGTGACAGACTAGCAACCAGCTTAAACTTTCTGGTGTTCCCTT
CAAGTGAGTAGTTCCTACTTTGACTCTTTTATTTAATGACCTTGTTTTTC
CCTATTCTTTTGAGGGATGGTATATTTCCCCCTAGATTCCATGCCTTTGT
TTCTTGTAGTATCTCCGTTTCAGCATCAGTTATCCCAAGTGGCACATTTA
ATTCAGGAATATATAAATTAAGAGAGCATAAATCTAATCCTACTACTGGA
ATTAAGTTTATTTTTGAAAGAACGTAAAAAAAGGCCCCTTTTTCTTTCCC
CAAAAAAACAATTTTCCTATAAGCCCACTTCTTTCGGCCGCAATCTCCCC
ATGTTTCCCCCCTCTTTCCCGCGCTCGTCGCAACCACTCTTTTACAAAAA
AACCCCCATATAAAAATTCCCCCTTTTGCAATTTTTTCTTCCTTTTTTTT
CGCCCCCCCATCACCCCCATATCCTCTCTCTCCTCTCCCGCCTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no389_e15.g1 MSMg01no389_e15.g1 CHROMAT_FILE:
MSMg01no389_e15.g1 PHD_FILE: MSMg01no389_e15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:32:50 2005
         (364 letters)



>mm_chr1_140728228_140728991
          Length = 764

 Score =  665 bits (344), Expect = 0.0
 Identities = 359/364 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttcctggtgttgaatttcgttcccagacttttgggaagatttataagattacacagggtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ttcctggtgttgaatttcgttcccagacttttgggaagatttataagattacacagggtt 505

                                                                       
Query: 61  gccatgagcgacctgccatctccccctcagtgaccaatagcagacattttctgctctcct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gccatgagcgacctgccatctccccctcagtgaccaatagcagacattttctgctctcct 445

                                                                       
Query: 121 gtgcttctctggtagtttggggtctgtgactgggaagagtttgcacagaatttgtcttgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||
Sbjct: 444 gtgcttctctggtagtttggggtctgtgactgggaagagtttgcacagaatttgtcaggt 385

                                                                       
Query: 181 gacagactagcaaccagcttaaactttctggtgttcccttcaagtgagtagttcctactt 240
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gacagactagcaaccggcttaaactttctggtgttcccttcaagtgagtagttcctactt 325

                                                                       
Query: 241 tgactcttttatttaatgaccttgtttttccctattcttttgagggatggtatatttccc 300
           |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 324 tgacacttttatttaatgacctcgtttttccctattcttttgagggatggtatatttccc 265

                                                                       
Query: 301 cctagattccatgcctttgtttcttgtagtatctccgtttcagcatcagttatcccaagt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cctagattccatgcctttgtttcttgtagtatctccgtttcagcatcagttatcccaagt 205

               
Query: 361 ggca 364
           ||||
Sbjct: 204 ggca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 364
Length of database: 764
Length adjustment: 9
Effective length of query: 355
Effective length of database: 755
Effective search space:   268025
Effective search space used:   268025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)