BAC Information

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BAC

Clone NameMSMg01-389H19
Chromosome1 (Build37)
Map Location 66,819,667 - 66,820,093
singlet/doubletsinglet
Overlap gene1110028C15Rik
Upstream geneCrygf, LOC667781, EG667786, Mtap2, C030018G13Rik, Rpe
Downstream geneAcadl, Myl1, LOC100043192, Lancl1, Cps1, Kif22-ps
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-389H19.T7 (MSMg01no389_h19.b1)MSMg01-389H19.TJ (MSMg01no389_h19.g1)
ACCAG491731AG491732
length775749
length of high quality
(start - end)
431 (51 - 481)460 (82 - 541)
definitionCHROMAT_FILE: MSMg01no389_h19.b1 PHD_FILE: MSMg01no389_h19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:33:06 2005CHROMAT_FILE: MSMg01no389_h19.g1 PHD_FILE: MSMg01no389_h19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:33:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNTTCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTTATATTGTATTTATTGATTTACACATACTGAAGAATTCT
TACATCACTAAAATGACGCCTATTTAGTCACAGTGTTTTTTAAAAATGTG
TTCCCATTGGCCTACTATCAAGACCTCACCTTATGACCAAATTACACATC
TATGGGTTAATCTCTCAGGATCTAAATGACCCAATCACCCCTCAAGAGCT
GGGATTATGACCTAGGGACTAATGCTGAATACATGTGACTTTTGGAGAAA
CATTTGATATCTAAATCTTGCCAAGCAGTTTAAGAAGCAAAAATGTATCT
AAAGTTATTTCGTAAAGCAAGAACTCTACATACCTGTTTCTCTATGTTTC
GAAGAAGTAGTGTAGGGCTGCTTGGTGACATCTCAAAATCGTGTTCTGGT
AAAGGCTCTTCACTCCTCTGGGGAACCTGAGAATTCACTGAAGTGTTTAA
TGAAACTGCTTGGTTTGCAAACTGTATTTGTTTTTTCAAAATGTCTTTTG
NAAGCTGACATTCTTCTAAGATCACTATCCCCTANGGGGTAAAAAACAGT
AAAGGGATTCCCTCCTACTATCCTCCTAGAAACCTANAATGAAGAATTTG
GAATATTGTTATTTGTCCAAAAACACTGGCTGATTAACCCGGGAAAAAAG
GCTCCCCCCCCAAAAAAGGGGCTATTTTTTCTTTCTAAAAAACAAATTTG
TCCCCCCCCCCCTGCCGGAAACCTG
NNNCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTAGAGAACAAGAAAGCT
ACTGAAAATATCAATGAGACCAAATTTTTGCCAAGATAAACAAATCTTCA
ATTAGACTAAGAATCATAGACTTATCGGAAGTAAGAAAATAGAAGTGGCC
AAACAAATATAGATTATAGTGTTCTATTAGGAATATTTGTACTCCAACAA
ACTTGATAACCTAGAAAAATATAATATATACACACAATACCAAGATAATA
AAATAGTTAAAAATTAAACCTGCCAATGTTGAGCAAGGAGATGACAACAA
ATATCTTATCAAAAAGCAAGAACCAACCAGGTGATGGTGGAGTACACCTT
TAATCTGAGCACTTGAGAGGCAAGGCAGGTGGATCTCTGTGGTGAAGTCT
AACCTGTTCTTTACATGATCATCAATACAAGGAAAAAATCAATATCCTTT
TTTTTGTTGTTGAAATTACCAACAGTTATAAAAGGAATGTACCTTANAAG
ATTCCCAGATAATCTCTTAGTAATAGCAAACTTGAAAGCCTTCCTTTTAA
GATAAGAAACAAGACAAGGATACTTATTGTTCAGACTGGTTCAAGAAACA
GACCANGAATTATGATTCTAGAACATGATTTGAGTTCTGGAAGTTAGGCG
TTTTCGGGGGAATTGCGATTCATTCTTGGAAAGGCGTCAACTTGAATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no389_h19.b1 MSMg01no389_h19.b1 CHROMAT_FILE:
MSMg01no389_h19.b1 PHD_FILE: MSMg01no389_h19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:33:06 2005
         (431 letters)



>mm_chr1_66819463_66820293
          Length = 831

 Score =  826 bits (427), Expect = 0.0
 Identities = 427/427 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttatattgtatttattgatttacacatactgaagaattcttacatcactaaaat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttatattgtatttattgatttacacatactgaagaattcttacatcactaaaat 264

                                                                       
Query: 65  gacgcctatttagtcacagtgttttttaaaaatgtgttcccattggcctactatcaagac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gacgcctatttagtcacagtgttttttaaaaatgtgttcccattggcctactatcaagac 324

                                                                       
Query: 125 ctcaccttatgaccaaattacacatctatgggttaatctctcaggatctaaatgacccaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctcaccttatgaccaaattacacatctatgggttaatctctcaggatctaaatgacccaa 384

                                                                       
Query: 185 tcacccctcaagagctgggattatgacctagggactaatgctgaatacatgtgacttttg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tcacccctcaagagctgggattatgacctagggactaatgctgaatacatgtgacttttg 444

                                                                       
Query: 245 gagaaacatttgatatctaaatcttgccaagcagtttaagaagcaaaaatgtatctaaag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gagaaacatttgatatctaaatcttgccaagcagtttaagaagcaaaaatgtatctaaag 504

                                                                       
Query: 305 ttatttcgtaaagcaagaactctacatacctgtttctctatgtttcgaagaagtagtgta 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttatttcgtaaagcaagaactctacatacctgtttctctatgtttcgaagaagtagtgta 564

                                                                       
Query: 365 gggctgcttggtgacatctcaaaatcgtgttctggtaaaggctcttcactcctctgggga 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gggctgcttggtgacatctcaaaatcgtgttctggtaaaggctcttcactcctctgggga 624

                  
Query: 425 acctgag 431
           |||||||
Sbjct: 625 acctgag 631


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 431
Length of database: 831
Length adjustment: 9
Effective length of query: 422
Effective length of database: 822
Effective search space:   346884
Effective search space used:   346884
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)