NCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTATACTGATTACCCTTGAATGGCTGAGAAACACCTAAAGAAA
TGTTCAACATCCTTAGTCATTAGGAAAATGCAAATAAAAACAACCCTGAG
ATACTACCTCACACCAATCAGAATGGCTAAGATAAAAAACTAAGATGACA
GCAGATGCTGGTGAGAATGTGGAGAAAGATGTGGGATTGCAATCTGGTAA
ACAACTCTGGAAATCAGTTTTGTGGTTCCTCAGCAAATTGGAGATAGTAC
TACCTGAGGACCCAGCTATACCACTCCTGGACATGTATCCAGAAGATGCT
CCAACATGTAATAAGGGCACATGCTCCACTGTGTTCATAGCAGCCATATT
TATAATGGCCAGAAGCTGTAAGTAACCCAGATGTCCTTCAACAGAGGAGT
GCATACAGAAAATGTGGTACTACTTAGCTATTAAAAACACTGACTACATG
AAATTTGTGGACAAATGGATGGATCTAGAANATATCCTCCCGAGTGAAGT
AACGCCGTCCCCAAAGAACACATATGATATGCCCTCCCTGATAAGTTGAT
ATTACGCCAAGAGCATGAACCATCCCTGATTCCACTCCTGTCCCCCATAA
GTTGATGCAGGATGGACACCCCACAGGGCGCGCCTTCCCCCACCTTCAAG
AGGGAACCAACCCCCCCCCCCAACCTCCCATTTTCAGCCTCTTTTCTCCC
CCAACCTACCTCCTTCCCCCTTTCTCTT

NNNNCCGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCTGATTGGTTTGTTTCCCAT
GGCTTGTTCAGACTGCTTTCTTATGACATTCATGACCACTTCACCAGGAA
GTGGTATTGCCTACAGTAGTCTGGGCCTTCCCACTTCAATAATCCAAAGG
CTTGCCTGCAAGCTGATCTGATGGGGGCATTTTATCAATTGAGATTCTCT
CTTCCCAGGTGACTAGTTTGTGTAAACTTGACAAAACAAAAACAAAACAA
AACAACAACAACAACAACAAAAAGACTATTTAAACAATAACCAGCATGGT
AGAATGAAACATGTTTTAGAGCTCTAAGTTTTTCAGGGTTTTTTGATAAA
ACACAAAACTTACTCCCAAAAGCTACTTCAAGATAAAGTTCTCACAGCCC
TACTCCTAGCTCATGCACCTGTCTCCTTTTCCTGCATCCAGGATTCATTG
CTCATCAACACCTACAGTCTCAGGTCATTGCAGTGGAGGCAGATGATGGT
TACTGCTTATGCTGCTCCAGTCTTTATAAACTGCCTCAGTGCAGGCACAC
TTCCTGGCTTAGTCACTGCTAAAATGCTGGATCCTAAATCTATGCTCCAA
AAGATGATTGGTGAATGTATGTTACTTCCAAGAAACAGTTTGAAAACCAG
GCTGGCGCTCTGGGGAGCACCCATTTATCTTGAACTGAAGAATAAACATT
C

Query= MSMg01no389_j19.g1 MSMg01no389_j19.g1 CHROMAT_FILE:
MSMg01no389_j19.g1 PHD_FILE: MSMg01no389_j19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:33:16 2005
         (533 letters)



>mm_chr1_3086819_3087751
          Length = 933

 Score =  833 bits (431), Expect = 0.0
 Identities = 468/485 (96%), Gaps = 8/485 (1%)
 Strand = Plus / Minus

                                                                       
Query: 49  cattcatgaccacttcaccaggaagtggtattgcctacagtagtctgggccttcccactt 108
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 930 cattcatgaccacttcaccaggaagtggtattgcctacagtagtctgggccttcccactt 871

                                                                       
Query: 109 caataatccaaaggcttgcctgcaagctgatctgatgggggcattttatcaattgagatt 168
           |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct: 870 caataatccaaaggcttgcctgcaagctgatctgatgggggcatcttatcaattgagagt 811

                                                                       
Query: 169 ctctcttcccaggtgactagtttgtgtaaacttgacaaaacaaaaacaaaacaaaacaac 228
           ||||||||||||||| ||||||||||| |||||||||||||||||||||        |||
Sbjct: 810 ctctcttcccaggtgtctagtttgtgtcaacttgacaaaacaaaaacaa--------aac 759

                                                                       
Query: 229 aacaacaacaacaaaaagactatttaaacaataaccagcatggtagaatgaaacatgttt 288
           |||||||||||||||||||| |   |||||||||||||||||||||||||||||||||||
Sbjct: 758 aacaacaacaacaaaaagacaacaaaaacaataaccagcatggtagaatgaaacatgttt 699

                                                                       
Query: 289 tagagctctaagtttttcagggttttttgataaaacacaaaacttactcccaaaagctac 348
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 tagagctctaagtttttcagggttttttgataaaacacaaaacttactcccaaaagctac 639

                                                                       
Query: 349 ttcaagataaagttctcacagccctactcctagctcatgcacctgtctccttttcctgca 408
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 ttcaagacaaagttctcacagccctactcctagctcatgcacctgtctccttttcctgca 579

                                                                       
Query: 409 tccaggattcattgctcatcaacacctacagtctcaggtcattgcagtggaggcagatga 468
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 tccaggattcattgctcatcaacacctacagtctcaggtcattgcagtggaggcagatga 519

                                                                       
Query: 469 tggttactgcttatgctgctccagtctttataaactgcctcagtgcaggcacacttcctg 528
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 tggttactgcttatgctgctccagtctttataaactgcctcagtgcaggcacacttcctg 459

                
Query: 529 gctta 533
           |||||
Sbjct: 458 gctta 454


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 933
Length adjustment: 10
Effective length of query: 523
Effective length of database: 923
Effective search space:   482729
Effective search space used:   482729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)