BAC Information

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BAC

Clone NameMSMg01-389K01
Chromosome1 (Build37)
Map Location 59,338,502 - 59,338,916
singlet/doubletsinglet
Overlap geneAls2cr7
Upstream geneAox3l1, EG628262, Bzw1, Clk1, Ppil3, Nif3l1, Orc2l, BC049806, Ndufb3, EG667397, Als2cr12, Cflar, LOC100042431, Casp8, EG667419, Trak2, Als2cr2, 4930408G06Rik, EG667447, Als2cr11, Als2cr4, Mpp4, Als2
Downstream geneFzd7, Gm973, Sumo1, LOC100042476, Nol5, B430105G09Rik, LOC100043007, Bmpr2, Als2cr13, LOC100042496, Ica1l, Wdr12, Carf, Nbeal1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-389K01.T7 (MSMg01no389_k01.b1)MSMg01-389K01.TJ (MSMg01no389_k01.g1)
ACCAG491837AG491838
length867754
length of high quality
(start - end)
77 (82 - 158)415 (82 - 496)
definitionCHROMAT_FILE: MSMg01no389_k01.b1 PHD_FILE: MSMg01no389_k01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:33:18 2005CHROMAT_FILE: MSMg01no389_k01.g1 PHD_FILE: MSMg01no389_k01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:33:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCAATTATAACXXXXXXXXXXXXXXXXXXXXXCTATTCCCAGAGGATCC
GCGGAATTCCTGTCCTTCCCCAGGCCAGTCACCTAACTTCCCTAGTTCCC
TCCAGTGTGTGGAGAGGATTAATGGTGTAAGAGCTGTAAGGTGCTTATGA
CCCAAACACAAGAAAATCATCACAACAGCATTCTGGTTTAGTTATGGCAT
GCAAAGCATGAGATGAAATAAAAGGCCCACTTAGCCCTGTATCTGTGGCT
TGGGGTCTTTGCTGAAGTTATATATATATATGTGTGTGTGTGTGTGCGCG
TGTGTGCCCGCCTCCCCCCCCCTCTTTTTCCCNCCCCNCCNCCCCCCCCC
CCCCTCCCCGNCCTTCTTTCTTCCTCCCTCCCCTCCTCCCGCGGCCCGCC
CTCCCTCCCTTCCTCCCCCCTCCCCCCCTTCCTCCCTCCTCCCCCCCCCT
CCCTCCCCCCTTTCCCCCCTCCCTCCCCTTCCCCCCTCCTTCCCTCCTCC
CCTCCTCCTCCCCCCTCCTTCCCCCTCCTTCCCTTCCCCCCCTCCTTCCT
TATCGTCCCCCGCTCCCCCCCCCTCCCTTNTCCCCCCCACTCTCCCTTTC
CACTTTCCTTCCCCCTCCCCCCCCCTTCTCTTCTCCTCCCTCCCCCCTTT
TTCCCCTTTTGCCCCCTTCCCTCCCCTCCTTCCTCCTCTTTCCCCTCCGC
CCTTTCCCCCCACCCCCCCCCCCCCCCCCCCTTTTCCCCTCCCTTTCCCT
CCCCCTTCCTTTCCTCCCCATTCCCCTTACCTTCCCCCTTCCCTCATCCC
TTCCTCCTCTCCCCTCCTCCCCTTTTCTCTTCCCTTCCTCCCCCCTCTCC
CTCCTCCCCCCCTTTTT
NNCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAGATTGCCTAGACAATAG
TGTAAGATTCTGTCTCACAACAACCTGGAATTATAGATGGCTGTGAGCTG
CAGGGTAGGGGTTGGGAGTCCTCTACAAGAGCGGCCAGTGCTCATAAGCA
TGAAGCTACCTCGTGGGCATCACCACCCTTCTGGTCTAAAATGGCAGTAC
TTACCAGTTCCCAGAGAGGAGTGGAAGAAAGCAGACATTTTGACAGATTC
AGAAGTGGAGTTTTGCCAGGCATGTGGAAAGAATGACCAGTGGGACAGGG
GTGTGCAAGAATCTGACAAGAGAAGTTAACGTGATGACACTGGCAACTAG
ACTGGGTCTAGCCTCAGGTCACTGTGTGAAGATGAGCAAGGTGCTAAGGG
GATCGTGGACTGCTTGAGGGATTAGAGATTCATTAAACAGAAGAACGCTC
AGAGAATAACAGATTTTGGGGCTTGAGTAACTCACACAGCAGACCCGGGA
ATGTCCAGAAGGATAAAGACCCAGAAGCTATAGTTCCTACCCTTACAGCA
AAATGAGATGAGAAGACCTCCTAACCCTAACGAAAGGCTAGTAAGCGAAC
GCGTGGAAAGCTCAACGGGCTATTAGTACTGGCCTGCTCTTACTGAGGAA
CCTGGGTTCGCCTCCCCTCCACCCACCCTTGCCCCTGACACCCCCCCCGT
TACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no389_k01.g1 MSMg01no389_k01.g1 CHROMAT_FILE:
MSMg01no389_k01.g1 PHD_FILE: MSMg01no389_k01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:33:18 2005
         (415 letters)



>mm_chr1_59338302_59339116
          Length = 815

 Score =  764 bits (395), Expect = 0.0
 Identities = 410/415 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tagattgcctagacaatagtgtaagattctgtctcacaacaacctggaattatagatggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tagattgcctagacaatagtgtaagattctgtctcacaacaacctggaattatagatggc 260

                                                                       
Query: 61  tgtgagctgcagggtaggggttgggagtcctctacaagagcggccagtgctcataagcat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtgagctgcagggtaggggttgggagtcctctacaagagcggccagtgctcataagcat 320

                                                                       
Query: 121 gaagctacctcgtgggcatcaccacccttctggtctaaaatggcagtacttaccagttcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaagctacctcgtgggcatcaccacccttctggtctaaaatggcagtacttaccagttcc 380

                                                                       
Query: 181 cagagaggagtggaagaaagcagacattttgacagattcagaagtggagttttgccaggc 240
             |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 381 gggagaggagtggaagaaagcagacattttgacagattcagaagtggagttttgccgggc 440

                                                                       
Query: 241 atgtggaaagaatgaccagtgggacaggggtgtgcaagaatctgacaagagaagttaacg 300
           ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 441 atgtgaaaagaatgaccagtgggacaggggtgtgcaagaatttgacaagagaagttaacg 500

                                                                       
Query: 301 tgatgacactggcaactagactgggtctagcctcaggtcactgtgtgaagatgagcaagg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgatgacactggcaactagactgggtctagcctcaggtcactgtgtgaagatgagcaagg 560

                                                                  
Query: 361 tgctaaggggatcgtggactgcttgagggattagagattcattaaacagaagaac 415
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgctaaggggatcgtggactgcttgagggattagagattcattaaacagaagaac 615


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 415
Length of database: 815
Length adjustment: 9
Effective length of query: 406
Effective length of database: 806
Effective search space:   327236
Effective search space used:   327236
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)