Query= MSMg01no389_n24.b1 MSMg01no389_n24.b1 CHROMAT_FILE:
MSMg01no389_n24.b1 PHD_FILE: MSMg01no389_n24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:33:37 2005
(494 letters)
>mm_chr1_25744903_25745796
Length = 894
Score = 890 bits (460), Expect = 0.0
Identities = 485/494 (98%), Gaps = 2/494 (0%)
Strand = Plus / Plus
Query: 1 agtattgatttggttatattgagacaggcataaagaggatatctgagctgaaatactgag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtattgatttggttatattgagacaggcataaagaggatatctgagctgaaatactgag 260
Query: 61 gctgccatttagttctacactgtgcacaacattggtaacatttagaactctaatacgaca 120
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctgccatttagttccacactgtgcacaacattggtaacatttagaactctaatacgaca 320
Query: 121 gatctatgcgtatcagtaggaggcagcatttcaaaggctctccgggtcactgatgtaagg 180
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 321 gatctatgtgtatcagtaggaggcagcatttcaaaggctctccgggtcacagatgtaagg 380
Query: 181 gcagcaaagaactcactagtgtttattgcttcaatatttaaaataggaactattttatca 240
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcagcaaagaactcactagtgtatattgcttcaatatttaaaataggaactattttatca 440
Query: 241 gtgtacaataaggaaacaagattctaagtaatatggattactaagcaggatgatttctcc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtgtacaataaggaaacaagattctaagtaatatggattactaagcaggatgatttctcc 500
Query: 301 tgcaacttgagaaaaatgactacaaccttcaagaaaattatgaatagtaaaaaaaaaaat 360
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 501 tgcaacttgagaaaaatgactacaaccttcaaaaaaattatgaatagtaaaaaaaaaaat 560
Query: 361 aacaattcatgaacagagaaaagaaagtaactcataccacacatgaatataaagcacaat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aacaattcatgaacagagaaaagaaagtaactcataccacacatgaatataaagcacaat 620
Query: 421 cttcatgaaaaacacatatattacatatatatatatatatatatatatatatatataccc 480
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 621 cttcctgaaaaacacatatattacatatatatatatatatatatatatatatatacac-- 678
Query: 481 atatatagtatata 494
||||||||||||||
Sbjct: 679 atatatagtatata 692
Score = 62.6 bits (32), Expect = 6e-14
Identities = 45/52 (86%), Gaps = 6/52 (11%)
Strand = Plus / Minus
Query: 432 acacatatat--tacata----tatatatatatatatatatatatatatata 477
|||||||||| || ||| ||||||||||||||||||||||||||||||
Sbjct: 697 acacatatatactatatatgtgtatatatatatatatatatatatatatata 646
Score = 60.7 bits (31), Expect = 2e-13
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 446 tatatatatatatatatatatatatatatat 476
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Sbjct: 675 tatatatatatatatatatatatatatatat 645
Score = 58.7 bits (30), Expect = 9e-13
Identities = 30/30 (100%)
Strand = Plus / Minus
Query: 445 atatatatatatatatatatatatatatat 474
||||||||||||||||||||||||||||||
Sbjct: 674 atatatatatatatatatatatatatatat 645
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 44
Number of extensions: 9
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 4
Length of query: 494
Length of database: 894
Length adjustment: 10
Effective length of query: 484
Effective length of database: 884
Effective search space: 427856
Effective search space used: 427856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
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