BAC Information

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BAC

Clone NameMSMg01-389P03
Chromosome1 (Build37)
Map Location 75,635,992 - 75,636,317
singlet/doubletsinglet
Overlap genenone
Upstream geneBcs1l, Rnf25, Stk36, Ttll4, Cyp27a1, Prkag3, Wnt6, Wnt10a, LOC100042901, Cdk5r2, Fev, Cryba2, Ccdc108, Ihh, Nhej1, Slc23a3, 1810031K17Rik, BC038286, Zfand2b, Abcb6, Atg9a, D1Ertd161e, Stk16, Tuba4a, A630095N17Rik, Dnajb10, Ptprn, Resp18, Dnpep, Des, Speg, Gmppa, Accn4, D1Bwg1363e, A230078I05Rik, AW822216, Inha, Stk11ip, Slc4a3, LOC100039069, LOC383531
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-389P03.T7 (MSMg01no389_p03.b1)MSMg01-389P03.TJ (MSMg01no389_p03.g1)
ACCAG492078AG492079
length777811
length of high quality
(start - end)
108 (335 - 442)327 (81 - 407)
definitionCHROMAT_FILE: MSMg01no389_p03.b1 PHD_FILE: MSMg01no389_p03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:33:42 2005CHROMAT_FILE: MSMg01no389_p03.g1 PHD_FILE: MSMg01no389_p03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:33:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCCCTCTATXXXXXXXXXXXXXXXXXXAGAATACTACATCATACACGGG
GCGNGGAANNCCAGNAATTGCAACTGAGGGACCAGGACACCAAATTCAAT
ACCAATCTGGGCTATAGAGTGACTACACCGTCAACCTAAGCAACTTAGTA
AGAACTTGTCTCACAAATAAAATCACCTGGCCCATAGGTATAAGGGCTTA
GGCTCAACCCTCAGTACTAAAAGGGAGAGGCATGGGAAAGAGAAAAAGTA
ACTCTGGGAGTTAGGATTAGGCTCAGCTATGAATAACAATAACCTAAAAA
GTCAAAGTGACTAACTACAATAGAACATTATCTATTACTTCTTGGCCAAG
TCCGCTCAATATAGCCTAAAGTTAGATTCTGCCGAAACTTACTTCCTTAA
CATGCCCTAATGTCAGATTCCTGCCTGAGCTTACTTCCTTGTCCTAGGCC
AATGCCAGACTACTGCCAAGAGGCACTCCACAAGGCCCTCTATAACTTCT
AACCTTTACATGCCAATACACAGCCCCCAACCGCACTTGTACCCCCTGGT
ACCCGGCACCTACCTCTTCCGTTCTCCTTTCTCACGGTCACCCTCCCTGC
CAAACACGTTCGCCCTCTCAGCCCACCCTCCCCTTGCCCTCCTTTCTACT
GTGCCTATACCGCTATCCCCTCCCCACCCCCACGGACCCTTCGCCGCCCC
GCCCCCCCCCTTCTTCCCTCCCCCTCCCCCCCCACCTTTCCTGCGCCACT
CCCTTCCCCCCTTCCCCGTTTTCTCCT
NCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTCTCGACATTTGTTTTA
GGAATTAGTTTTCAGGGTATGAATGAAAAAGGCTGCAGAACTGTGCTAAT
CTGGGCCATCAGGTAGGATTGTGCCTTCTATCCTTCCTTTGTTGAGGGTT
GATCTGGGGCTGCTTGTATTCATTTGCTAAATTCTGCACCCCAAGATTTG
GTTGCCCCAAGATGAGCAAATTCATACATAGCCTTTATTGTGCAAACCTT
ACTTCCCAAGTTAAAACTATTGGTTGGATATTAATGGCTGCAACCAGTTA
CTGGGGAGAGGTAGAGAGGTCACAGGTAGGGACCATGAAGGAGGAGGAGG
AGGAGGAGGAGGAGCTTTTTACCCCCCCTCCTTCTCTTTCCCTTCTCTCC
TTCCCCCCCCCCCTTCCTCCCCCTTTTTCCCCTCCTTTCCTGTTCTTCCC
ATCCCCCCCCCCCCCCCTTCCCCCTCCTCTTTACCCTCCCCCTTTTTCCT
TTTCTCTCTTCCCCCCCTCTTTTTCCCTCTCCCTTTCCCCCCTCCCTCTT
TCCCCTCCCCCTTTTTTTTTCCCTCCCCCTTTTTTTCTCCCCACATTTCC
CTCCCCTTTCCCCTCATTTTTTTTCCCCATCCCCTTCTGTTCCCGCTCCT
CCCTCTTACCCTCTTTCTCCTCCCCCCCCATTTCTTTGCCCGTACTATTA
CCCTCTTCTACCGCCCCCGCCCCCTTTTTATCTTGTCCTCCCACATACCC
CTCTCCTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no389_p03.g1 MSMg01no389_p03.g1 CHROMAT_FILE:
MSMg01no389_p03.g1 PHD_FILE: MSMg01no389_p03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:33:42 2005
         (327 letters)



>mm_chr1_75635792_75636518
          Length = 727

 Score =  615 bits (318), Expect = e-180
 Identities = 324/326 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttttctcgacatttgttttaggaattagttttcagggtatgaatgaaaaaggctgcagaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttttctcgacatttgttttaggaattagttttcagggtatgaatgaaaaaggctgcagaa 260

                                                                       
Query: 61  ctgtgctaatctgggccatcaggtaggattgtgccttctatccttcctttgttgagggtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgtgctaatctgggccatcaggtaggattgtgccttctatccttcctttgttgagggtt 320

                                                                       
Query: 121 gatctggggctgcttgtattcatttgctaaattctgcaccccaagatttggttgccccaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gatctggggctgcttgtattcatttgctaaattctgcaccccaagatttggttgccccaa 380

                                                                       
Query: 181 gatgagcaaattcatacatagcctttattgtgcaaaccttacttcccaagttaaaactat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gatgagcaaattcatacatagcctttattgtgcaaaccttacttcccaagttaaaactat 440

                                                                       
Query: 241 tggttggatattaatggctgcaaccagttactggggagaggtagagaggtcacaggtagg 300
           ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tggttggataaaaatggctgcaaccagttactggggagaggtagagaggtcacaggtagg 500

                                     
Query: 301 gaccatgaaggaggaggaggaggagg 326
           ||||||||||||||||||||||||||
Sbjct: 501 gaccatgaaggaggaggaggaggagg 526


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 327
Length of database: 727
Length adjustment: 9
Effective length of query: 318
Effective length of database: 718
Effective search space:   228324
Effective search space used:   228324
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)