BAC Information

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BAC

Clone NameMSMg01-389P20
Chromosome1 (Build37)
Map Location 194,260,532 - 194,260,787
singlet/doubletsinglet
Overlap geneKcnh1
Upstream geneLOC667044, Dtl, Ints7, Lpgat1, Nek2, 4930557M11Rik, Slc30a1, 3322402L07Rik, LOC100042611, Traf5, Traf5, LOC100042625, Rcor3
Downstream geneHhat, A730013G03Rik, Sertad4, LOC100039677, Syt14, AA408296, Irf6, A130010J15Rik, Traf3ip3, Hsd11b1, G0s2, Lamb3, Camk1g
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-389P20.T7 (MSMg01no389_p20.b1)MSMg01-389P20.TJ (MSMg01no389_p20.g1)
ACCAG492111AG492112
length780760
length of high quality
(start - end)
249 (76 - 324)249 (86 - 334)
definitionCHROMAT_FILE: MSMg01no389_p20.b1 PHD_FILE: MSMg01no389_p20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:33:45 2005CHROMAT_FILE: MSMg01no389_p20.g1 PHD_FILE: MSMg01no389_p20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:33:45 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGACCATCCG
CGGAATTCCTCCCATGTTCCTCTGGAGTCGAAAATTACAGGACCCTAAAC
ACCCTCAGGTCCACAGGCAAGCTCTACCTTCTCTTCTCTGGAGATCTGAC
ACTTGAAAGGATGATCTGAGACTGACCACAACTTTGGTTCTTGCTCTTTT
CTAGAGCTGTCAATCACTCGATCTGCATAAAACCAGCCTGACCACTGAGA
CATCGTTGCTTTTTGTTATTTTTTTTTAGACAGATTTACTTGAGCCACAA
TTATTCCAAAATGATTACTTCTCCTTATATCTCAAGCTGCATATTTTTCA
ACCCATATCACCAGCAACTCTGAGAGCCGATTATAATCAACTGGCTTTCA
TGGATAGAAGGAATAAACCAAAAAATAGGTTTTTGGAGAATCCACTCGGC
TTAAAGTATCTTCATAAAGCATCCATGCTCCCAGTCAGCAGACAGGTAAG
GAACACTTCTCTAGCCATCCTCAGCCCACAGGGGCAGGCCTGCAATCAAA
GAGCTGGACAAGTGCTTCCCTCTACACCCTGCCTCGCCTGACCGTGCACA
CCCAGACTCCCATGCCCCCCTCTCTTCCCCTCTTTCCTCGATAGTCGCCT
GACCCTTCCCTCCTCCTTTTTTCCCCTATTTCCCTCCCGATCTCGTTATG
CCCCCGGCCGCCCCCCCCCCTTCCTTACCCCTCCTGCCCCCCCTTCCTTC
GCCTTCCCTCCCCCCTTCCCTTCCCTTTAA
CCCCCCCCACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATGTATTTTAAATT
GTCTTTTGATAAGCGCTTTTGGGCCCATGAATTATTGAAGAATGCACTGT
TTAGTTTTCAAGTGTTGGGGTATTGCTGTCTTTCCAGTGTGTGTGGGCGT
ATAGGACAGAAGTTGTGCGGTTTTCTGTTAAGTGTTTGCGGTTGTCTGAC
GGACGAGCATGAGGCTCTCCTGATAATGCTCTATGTACCTTTGAAGAGAC
TGTGTACTCTGCTGCTGTGGGAAGAGAATTCTATCTTTTTAAAATCCCAC
TGATTCTTGACATCATCAAATTCTACTTCCTTGTGAATCCTCTCACTCAC
TCTTCCCCTCCCTCCTTCCTCATGGNAAGGATGGAGCCCAAGGTCTCATG
TAAGCTCCACCACCAAGCTACATCTTCCACCATTTTTGCTAGTTTTCTGC
TTAGTGCTCGCCGTATCCTTCGCTGAGAGAGACGGGTGTGAATGAGCTTT
TCCCTTCTCTTCCATGGCGTTTTGCTTCATGCCCTCCGAAAATCTTTTCC
GGGCATCCCTAAGGAAGGGCACCCTGGCTTTCCTGGCGAATTGGTTCCCC
CGAAAAACGTGCCCCTTCCCTTTGTTTTGTCTTTGGGCCTTTTCCTGTCC
CCAAACTCGACTCTCCGAACCATTCCCTTTTCCTCTTTCTTCCACCTTCT
CTTCCTTCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no389_p20.b1 MSMg01no389_p20.b1 CHROMAT_FILE:
MSMg01no389_p20.b1 PHD_FILE: MSMg01no389_p20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:33:45 2005
         (249 letters)



>mm_chr1_194260389_194261036
          Length = 648

 Score =  449 bits (232), Expect = e-131
 Identities = 247/256 (96%), Gaps = 7/256 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtcgaaaattacaggaccctaaacaccctcaggtccacaggcaagctctaccttctctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 agtcgaaaattacaggaccctaaacaccctcaggtccacaggcaagctctaccttctctt 340

                                                                       
Query: 61  ctctggagatctgacacttgaaaggatgatctgagactgaccacaactttggttcttgct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 ctctggagatctgacacttgaaaggatgatctgagactgaccacaactttggttcttgct 280

                                                                       
Query: 121 cttttctagagctgtcaatcactcgatctgcataaaaccagcctgaccactgagacatcg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 cttttctagagctgtcaatcactcgatctgcataaaaccagcctgaccactgagacatcg 220

                                                                       
Query: 181 ttgctttttgttatttttt-------tttagacagatttacttgagccacaattattcca 233
           |||||||||||| ||||||       ||||||||||| ||||||||||||||||||||||
Sbjct: 219 ttgctttttgtttttttttgtttttttttagacagatctacttgagccacaattattcca 160

                           
Query: 234 aaatgattacttctcc 249
           ||||||||||||||||
Sbjct: 159 aaatgattacttctcc 144


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 648
Length adjustment: 9
Effective length of query: 240
Effective length of database: 639
Effective search space:   153360
Effective search space used:   153360
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)