BAC Information

Click to search

BAC

Clone NameMSMg01-390A02
Chromosome1 (Build37)
Map Location 75,780,083 - 75,780,203
singlet/doubletsinglet
Overlap genenone
Upstream geneCyp27a1, Prkag3, Wnt6, Wnt10a, LOC100042901, Cdk5r2, Fev, Cryba2, Ccdc108, Ihh, Nhej1, Slc23a3, 1810031K17Rik, BC038286, Zfand2b, Abcb6, Atg9a, D1Ertd161e, Stk16, Tuba4a, A630095N17Rik, Dnajb10, Ptprn, Resp18, Dnpep, Des, Speg, Gmppa, Accn4, D1Bwg1363e, A230078I05Rik, AW822216, Inha, Stk11ip, Slc4a3, LOC100039069, LOC383531
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-390A02.T7 (MSMg01no390_a02.b1)MSMg01-390A02.TJ (MSMg01no390_a02.g1)
ACCAG492123AG492124
length746734
length of high quality
(start - end)
121 (175 - 295)---
definitionCHROMAT_FILE: MSMg01no390_a02.b1 PHD_FILE: MSMg01no390_a02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:33:46 2005CHROMAT_FILE: MSMg01no390_a02.g1 PHD_FILE: MSMg01no390_a02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:33:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAAAAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGC
GCGGAATTCATTTATTGTCCCCAAACCGACCACATAGTGGGGAGCCTTTG
TGATGGTCTGACAACAGAAACCTGTCGAACACAGCAAGGAAATCCCTTAC
CAGGCCTCTGCTCAGGAACAGCTTTGAACACCAGGGCATCAGTAATCAAA
TTTTTATGCTCTGGTGTCTTCATTGTTGAAGATGCTGCTTGGCCAGCCCA
CTCAGAAACCAAAGAAGCTAGAGTTTTAATCTTTTCAAATCCTGAAGTAA
ATGTAAATTTTAGAATTATATATAATGTCAATAAACATGGCTTCAGCTGG
CTGGGACCAGTGACAAATTGACCAACATTCTTTGAGTCAGCTTTGAGCTT
TGTAGCCATCTAGTTGAGGAGGCGTCAGAGATCCCGTGTCACAAGGAACA
ACACTGAAGTACAAAAAAAAGCAAGAAGAACTGCAGATTGAGGCTGATTT
TCCTTGCATTTTCCTTGGAATGAAGTGGATGCCTAGGAGTCTAGCAGGAA
CACCTTGTGGCTCACCTACCTTTCCCTAGTCCACGGTGAGTGACCAATTT
CCCAAATGCCTTCTCTTTCTTGACAAGGGCGCCCCCCGGTCCCAACCATT
TTGGATCAGGGACCCAATCTTCCCTGGGCCCCCTGGCTTCCCGGACAACA
TTACACATGGGCTCTCGGCACGACTCGATGTGCCGGAGCTTAACCG
NNNCCACGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCTATGACTCAGTTTTAGA
ATGTGGAAACAAAAACATTTTATAACCCTATCTCACGCCGCTGGCGGAGA
TAAATACCAGATGCGCTAAAGGAGAGAATGTATAAGAATTACGCCACAGG
AAGAAGCTGAAGCAAATGTTTGTCCAATCTCTAGAGTGAAAAGGAATTTC
AGAGCTTAGAAGCTTAGAACAAGCCACAAAGTAAAGCTACACAGACTTAA
CCGCATCAAAACTGTAAGCCTGCTGATATAGAGATAAAGGAACCAATGTA
AAGAGGTAAATGGAGAAGCGCATTTGCATAGCTGAGGACATGTAACTGGT
TGGCAAAACATACGAAACAGAGAAGCTATGTAGTAATCAAAAAATCCAAG
TTAATCCATGATAGCGTAGCTCATCTGTCCATTTAAGAATGAGTCTCCTC
TCTGACAGGGCTCCCTGCTGAACAGCAAACACTAAACACGCAAGTCCAAA
TGCTGATGTTTGTAGTCTGGGATGGCAGATAAGTAACAAAGAATAAGATG
AGTCTGACTGACTGTGTGAGATTTCCAAAGGTCTGGGACTCAGAGCATGG
AAGCTGTAGCCATGTCAAAGGGCATAGCATGCTCACCAATACTAGGAAGT
AACCCGGACCTGATAAAGGGAAAAGCCTAAAGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no390_a02.b1 MSMg01no390_a02.b1 CHROMAT_FILE:
MSMg01no390_a02.b1 PHD_FILE: MSMg01no390_a02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:33:46 2005
         (121 letters)



>mm_chr1_75779883_75780403
          Length = 521

 Score =  211 bits (109), Expect = 1e-59
 Identities = 118/121 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgaacaccagggcatcagtaatcaaatttttatgctctggtgtcttcattgttgaagatg 60
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 201 tgaacactagggcatcagtaatcaaatttttatgctctggtgtcttcattgttgaagttg 260

                                                                       
Query: 61  ctgcttggccagcccactcagaaaccaaagaagctagagttttaatcttttcaaatcctg 120
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 261 ctgcttggccagcccactcagaaaccaaagaagctagcgttttaatcttttcaaatcctg 320

            
Query: 121 a 121
           |
Sbjct: 321 a 321


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 3
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 121
Length of database: 521
Length adjustment: 8
Effective length of query: 113
Effective length of database: 513
Effective search space:    57969
Effective search space used:    57969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)